| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is arcC [H]
Identifier: 116492003
GI number: 116492003
Start: 227517
End: 228461
Strand: Direct
Name: arcC [H]
Synonym: PEPE_0192
Alternate gene names: 116492003
Gene position: 227517-228461 (Clockwise)
Preceding gene: 116492002
Following gene: 116492004
Centisome position: 12.42
GC content: 34.6
Gene sequence:
>945_bases ATGGATAAAAAAAGAGTGGTTGTAGCTTTAGGTGGTAATGCTATCTTATCAAAAGACGCTTCTGCTGAAGCTCAACAGGC AGCTTTACGTGATACATCAAAATATTTGGTTGAATTTGTAAAAAAAGGTAATGAATTAATTATTTCGCACGGAAATGGTC CTCAAGTAGGGAATTTACTTTTACAACAAACAGCAGGAAGTACTAAAGACAATCCTGCAATGCCGTTAGATACAGATGTT TCTATGACTCAAGGTAGTATAGGATATTGGTTACAAAATGCGATGGGAACAGAATTAAAAAAAGCTGGAATCGATAAGCC TGTTGCAACTGTCGTTACTCAGGTAGTGGTTGATGAAGCAGATGAAGCTTTTAAAAATCCTACTAAACCAATTGGACCGT TTTATGATGAAAAAGGTATGCAACAGCAAAAATTAGAGCATCCTGAATATGAGTTTGTAGAGGATGCTGGAAGAGGCTTT AGAAGAGTAGTGCCCTCTCCGAAACCAATTGATGTGGTAGAATCAGATGTTGTAGAAATCATGGTTAAAAATAAAATAAT TCCAATATCAGTTGGTGGTGGCGGCGTTCCTGTTATAAAAACAACTAATAGTTTAGTGGGAAAAGAAGCGGTTATTGATA AAGATTTTGCGTCAGAAAAATTAGCTGAAAAGGTTAATGCAGATATGTTGGTTATTTTAACTGCTGTTGATAACGTGTAT ATAAACTTTAATAAACCCAATCAAAAGAAGTTAGAGAAAATTAATATCGCAGAATTGAAAACATACATTAAAGTTGGACA ATTTGCCAAAGGAAGTATGTTACCAAAAGTTGAAGCAGCAATTGACTTTGTCCAGAACACTAAAAATGGGAGCGCTATAA TTACCTCGTTACAGAATGTTGGTAAATTTTTAGAGGATGGATCAGGTACAATTATTGTAAAATAA
Upstream 100 bases:
>100_bases GCAACAAGTTCCAAAGAAATAACTAACAATACAATAATAAAGGCTGGAAGCAGACCTTCCAGTTTTTTTGTTCTCAAAAA TTGAACTGGAGGTATAGATT
Downstream 100 bases:
>100_bases TTATCCAAAATTAAGGGGGATTTAGGAGAATGAAACTAATGTCAACTCCTAGAAAAGATGGTTTTCGATTACCCGCAGAA TTTGAATTCCAGAACGAGGG
Product: carbamate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MDKKRVVVALGGNAILSKDASAEAQQAALRDTSKYLVEFVKKGNELIISHGNGPQVGNLLLQQTAGSTKDNPAMPLDTDV SMTQGSIGYWLQNAMGTELKKAGIDKPVATVVTQVVVDEADEAFKNPTKPIGPFYDEKGMQQQKLEHPEYEFVEDAGRGF RRVVPSPKPIDVVESDVVEIMVKNKIIPISVGGGGVPVIKTTNSLVGKEAVIDKDFASEKLAEKVNADMLVILTAVDNVY INFNKPNQKKLEKINIAELKTYIKVGQFAKGSMLPKVEAAIDFVQNTKNGSAIITSLQNVGKFLEDGSGTIIVK
Sequences:
>Translated_314_residues MDKKRVVVALGGNAILSKDASAEAQQAALRDTSKYLVEFVKKGNELIISHGNGPQVGNLLLQQTAGSTKDNPAMPLDTDV SMTQGSIGYWLQNAMGTELKKAGIDKPVATVVTQVVVDEADEAFKNPTKPIGPFYDEKGMQQQKLEHPEYEFVEDAGRGF RRVVPSPKPIDVVESDVVEIMVKNKIIPISVGGGGVPVIKTTNSLVGKEAVIDKDFASEKLAEKVNADMLVILTAVDNVY INFNKPNQKKLEKINIAELKTYIKVGQFAKGSMLPKVEAAIDFVQNTKNGSAIITSLQNVGKFLEDGSGTIIVK >Mature_314_residues MDKKRVVVALGGNAILSKDASAEAQQAALRDTSKYLVEFVKKGNELIISHGNGPQVGNLLLQQTAGSTKDNPAMPLDTDV SMTQGSIGYWLQNAMGTELKKAGIDKPVATVVTQVVVDEADEAFKNPTKPIGPFYDEKGMQQQKLEHPEYEFVEDAGRGF RRVVPSPKPIDVVESDVVEIMVKNKIIPISVGGGGVPVIKTTNSLVGKEAVIDKDFASEKLAEKVNADMLVILTAVDNVY INFNKPNQKKLEKINIAELKTYIKVGQFAKGSMLPKVEAAIDFVQNTKNGSAIITSLQNVGKFLEDGSGTIIVK
Specific function: Unknown
COG id: COG0549
COG function: function code E; Carbamate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbamate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1789238, Length=313, Percent_Identity=47.9233226837061, Blast_Score=282, Evalue=2e-77, Organism=Escherichia coli, GI1786516, Length=316, Percent_Identity=39.873417721519, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1786732, Length=311, Percent_Identity=38.9067524115756, Blast_Score=175, Evalue=3e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001048 - InterPro: IPR003964 [H]
Pfam domain/function: PF00696 AA_kinase [H]
EC number: =2.7.2.2 [H]
Molecular weight: Translated: 33911; Mature: 33911
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKRVVVALGGNAILSKDASAEAQQAALRDTSKYLVEFVKKGNELIISHGNGPQVGNLL CCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH LQQTAGSTKDNPAMPLDTDVSMTQGSIGYWLQNAMGTELKKAGIDKPVATVVTQVVVDEA HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DEAFKNPTKPIGPFYDEKGMQQQKLEHPEYEFVEDAGRGFRRVVPSPKPIDVVESDVVEI HHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHH MVKNKIIPISVGGGGVPVIKTTNSLVGKEAVIDKDFASEKLAEKVNADMLVILTAVDNVY HHHCCEEEEEECCCCEEEEECCCHHHCCHHHHCCHHHHHHHHHHHCCCEEEEEEEECEEE INFNKPNQKKLEKINIAELKTYIKVGQFAKGSMLPKVEAAIDFVQNTKNGSAIITSLQNV EEECCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH GKFLEDGSGTIIVK HHHHHCCCCEEEEC >Mature Secondary Structure MDKKRVVVALGGNAILSKDASAEAQQAALRDTSKYLVEFVKKGNELIISHGNGPQVGNLL CCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH LQQTAGSTKDNPAMPLDTDVSMTQGSIGYWLQNAMGTELKKAGIDKPVATVVTQVVVDEA HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DEAFKNPTKPIGPFYDEKGMQQQKLEHPEYEFVEDAGRGFRRVVPSPKPIDVVESDVVEI HHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHH MVKNKIIPISVGGGGVPVIKTTNSLVGKEAVIDKDFASEKLAEKVNADMLVILTAVDNVY HHHCCEEEEEECCCCEEEEECCCHHHCCHHHHCCHHHHHHHHHHHCCCEEEEEEEECEEE INFNKPNQKKLEKINIAELKTYIKVGQFAKGSMLPKVEAAIDFVQNTKNGSAIITSLQNV EEECCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH GKFLEDGSGTIIVK HHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA