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The map label for this gene is yfhH [C]

Identifier: 116491965

GI number: 116491965

Start: 178383

End: 179195

Strand: Reverse

Name: yfhH [C]

Synonym: PEPE_0151

Alternate gene names: 116491965

Gene position: 179195-178383 (Counterclockwise)

Preceding gene: 116491966

Following gene: 116491963

Centisome position: 9.78

GC content: 39.11

Gene sequence:

>813_bases
ATGAACATCATTGACGTTGTGGAGCAAAAATACCCATCTTTATCGCGTCAAGAACGCAAAATCGCTCTAAAAGTCGTCCA
GCATCCCGCCGATGTCAAAAAGATGAATATCAATACTTTATCGAAAAAGGCCGAAGTTAGTACCGCCACCGTAACGCGCT
TTGTTAAAAAGATGGGATATCCCGACTTCAGTCAATTTAAGTTAGGTTTGGCTGAAGCAACTTCAAATATTACCGAAAAT
GTTGATAATGCACCTCTTCCAGATCAGGTCACAGATTTTTACAATCAAATGATTACTGGAACTTGGAAACGTATCAATCA
AAAAACTTTAAATCAAGTGGCGATGCTTATTAAAAATGCTCCCCGCGTCTTTATTTTTGGTTTAGGTAGCTCGGGTTACA
ATGCGCAAGAATTATCTCAACGGCTAATGCGGATGGGGATTAATGCTTTCGCTCCTTCTGATAGTCACACCATGTATATC
AGTAGTAGTATTATGCAAAAAGATGACCTCCTAATCGTTCTATCTGTTTCTGGCAAATCGAACGAAGTCAATGAAGCCGT
TGCTGTTGCTAAACAACACCAGCTAAAGGTCGTCTCCATCACTGCTTTTGATGATAGTCCCTTAGCCGAAATGAGTGATT
ACCAATTGTCCGTTCAATACAGCGAATTTGTCGATAATACTCAATTTATCAACTCCCAACTGGGTGTGGTTTATATCATC
GATATCCTTTCAACCATGCTATTGCAAAATGAAACTTATAAAGCTCGCTATCAACAAACTGTTGCGGCGATTTTAAATCG
GAAAATGAAATAA

Upstream 100 bases:

>100_bases
ACCCCTGTATTAAAGACTGGAATACTTGAAAAAAGTTCCAGTCTTTTTTATTTTCAGCGTATAATTAATACTAATCAAAC
CTAATCTAGGAGGATTTTTT

Downstream 100 bases:

>100_bases
ATTAAAAAAGATTTCAGCAGGGTAAATAACTCACCTTCGCTGAAATCTTTTCATTTATATTTATTTTTAATCTTCTCGCC
GGACCTCAACCACCGCCGCA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGYPDFSQFKLGLAEATSNITEN
VDNAPLPDQVTDFYNQMITGTWKRINQKTLNQVAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYI
SSSIMQKDDLLIVLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINSQLGVVYII
DILSTMLLQNETYKARYQQTVAAILNRKMK

Sequences:

>Translated_270_residues
MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGYPDFSQFKLGLAEATSNITEN
VDNAPLPDQVTDFYNQMITGTWKRINQKTLNQVAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYI
SSSIMQKDDLLIVLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINSQLGVVYII
DILSTMLLQNETYKARYQQTVAAILNRKMK
>Mature_270_residues
MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGYPDFSQFKLGLAEATSNITEN
VDNAPLPDQVTDFYNQMITGTWKRINQKTLNQVAMLIKNAPRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYI
SSSIMQKDDLLIVLSVSGKSNEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINSQLGVVYII
DILSTMLLQNETYKARYQQTVAAILNRKMK

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=264, Percent_Identity=25.3787878787879, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788159, Length=253, Percent_Identity=25.6916996047431, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082369, Length=188, Percent_Identity=26.5957446808511, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788767, Length=214, Percent_Identity=24.2990654205607, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30349; Mature: 30349

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY
CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
PDFSQFKLGLAEATSNITENVDNAPLPDQVTDFYNQMITGTWKRINQKTLNQVAMLIKNA
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLIVLSVSGKS
CEEEEEECCCCCCCHHHHHHHHHHHCCHHCCCCCCCEEEEEHHHCCCCCEEEEEEECCCC
NEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINSQLGVVYII
CHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEEHHHHHCHHHHHHCCCCHHHHH
DILSTMLLQNETYKARYQQTVAAILNRKMK
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIIDVVEQKYPSLSRQERKIALKVVQHPADVKKMNINTLSKKAEVSTATVTRFVKKMGY
CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
PDFSQFKLGLAEATSNITENVDNAPLPDQVTDFYNQMITGTWKRINQKTLNQVAMLIKNA
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRVFIFGLGSSGYNAQELSQRLMRMGINAFAPSDSHTMYISSSIMQKDDLLIVLSVSGKS
CEEEEEECCCCCCCHHHHHHHHHHHCCHHCCCCCCCEEEEEHHHCCCCCEEEEEEECCCC
NEVNEAVAVAKQHQLKVVSITAFDDSPLAEMSDYQLSVQYSEFVDNTQFINSQLGVVYII
CHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEEHHHHHCHHHHHHCCCCHHHHH
DILSTMLLQNETYKARYQQTVAAILNRKMK
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]