| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116491938
Identifier: 116491938
GI number: 116491938
Start: 147790
End: 149235
Strand: Direct
Name: 116491938
Synonym: PEPE_0124
Alternate gene names: NA
Gene position: 147790-149235 (Clockwise)
Preceding gene: 116491932
Following gene: 116491939
Centisome position: 8.07
GC content: 38.45
Gene sequence:
>1446_bases ATGATCGAGAAGTTTAACCGATTATTGGACGATGAGCAGCAGTTGGTCCTCCAACTAGCCGAACTGTATATCCATGATTC TGAGAAGAGGCTTTCGATAGGCTATGTTCAAGATGAGCTGGGAGTTAGTAGACATCAGGTGCTGGGCGCGTTTGATTTAT TAAAATCAACGATTACTGCACTTCGTATTGAAAACATTGATTTGGAATACGATGGCAAGGGAGTCCTGTTAATCTATGGT CTAACAACAACTTCAATGAAAACCATTCTGGAAAACATGGCGACCAGGTCAATTCGTTTGAATATTTTTATAAATTCTCA ATTGGGAATTTACGGCACCCAAGCTCAATTCCTAAAGCAATTCGGAATCAGTCGAGCAACCTATTATCGCAATATTATTT ATATTAGGCAAATTCTGTCGGAAGAATTCTTCAACAAGACCCATCGCAATGAAGAAAGTGTGCGACAGACTATTTTTAGC GTGATTCATCATTTTTTCAATGGAATTGATGCGATGCCGATTGAGCTGGGAGAGCCGGTGGACACTTTAATCACCGAGTT GAGTGAGCTAAAATCAATGCATTTAAGCTACACAGAACGGCAACGCTTGACGAATTTTTTGTTTGTCCAAACTAAGCGTA TTCGTCAGGGAAACGTGGTTAAAAAGATTGTCGATAAGGATTGCGCTAAGGAAAAGTTGGATTTTTTAGAGCCACTGAGA GATTTATGGGGGTTGGAAGAGCCTGATTTAATCCAAGAAGCTTGGTATCTGAACATTTATTTTATGGTCAACGAACTAGC GCCATTTGAAATTGAAAAGTGTGGGAATCAGCCGCCGTTAAAAGTAATTCAAACTTTGGTAGAAAAACAGCTCGATTTTT TGCACCAAATTTTTGAAGGGTTAGAAGTAGACGGCCAACTAGCAGAGATTCGACAGGAACTACTGGAAACCAACCTCAAA GTATTTTCGCCATTTTATTTCAGTGAGACGTTTGTAGATCCAACTAAGGTGCCCTTTTTCAGTGAAACTTATCCTGAAAT TGACGAGATGGTGAAACAAATTTTGGCGTATGTAGGCGAGCAACGTAAATTAAGGCTTGATAAAGATACGTTAACCCAGC TATATTATACTTACATGTTAATTTTGCTGGAACATCTACCGGTTCAGTTGGTAAGTAGTGTCGTGAAGATTACGGTCGAT TTTTCTAATGGAAAAGTTTTTACCAAGTACATCACGTCTCAGCTACAACAATTTGCGCCCCTTAATATCGAAATTTCTAA ACGTCTGGAAGATGATACGGATATATTTCTATCGGATCAACGTTTTTATGATGTCGATTGTGAGCAAATGATCTGGGAGT CACCACCTTTAGCTGAGGATTGGGAACAACTAGGTGATTTAATCGTAAAAATTAAACAAAATGATAAAAAAATAATTAAT AGCTAA
Upstream 100 bases:
>100_bases CTTTGTTCCCAAGATGATTTACCCCCAGACATATTTTTAGAGTCTATATTTTGATGCCTTTAAAAATATTGTTAACAAAT CACCTTAAGGAGTTAATAAT
Downstream 100 bases:
>100_bases CCAAAGACTTTTTAACGGCGTCCGCTCGGGACTTACTGTTAAAAAGTCTTTTTGAATTTTAAGGTGCATTCTCATGATTT TAAAATTAGATGAAAAACGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MIEKFNRLLDDEQQLVLQLAELYIHDSEKRLSIGYVQDELGVSRHQVLGAFDLLKSTITALRIENIDLEYDGKGVLLIYG LTTTSMKTILENMATRSIRLNIFINSQLGIYGTQAQFLKQFGISRATYYRNIIYIRQILSEEFFNKTHRNEESVRQTIFS VIHHFFNGIDAMPIELGEPVDTLITELSELKSMHLSYTERQRLTNFLFVQTKRIRQGNVVKKIVDKDCAKEKLDFLEPLR DLWGLEEPDLIQEAWYLNIYFMVNELAPFEIEKCGNQPPLKVIQTLVEKQLDFLHQIFEGLEVDGQLAEIRQELLETNLK VFSPFYFSETFVDPTKVPFFSETYPEIDEMVKQILAYVGEQRKLRLDKDTLTQLYYTYMLILLEHLPVQLVSSVVKITVD FSNGKVFTKYITSQLQQFAPLNIEISKRLEDDTDIFLSDQRFYDVDCEQMIWESPPLAEDWEQLGDLIVKIKQNDKKIIN S
Sequences:
>Translated_481_residues MIEKFNRLLDDEQQLVLQLAELYIHDSEKRLSIGYVQDELGVSRHQVLGAFDLLKSTITALRIENIDLEYDGKGVLLIYG LTTTSMKTILENMATRSIRLNIFINSQLGIYGTQAQFLKQFGISRATYYRNIIYIRQILSEEFFNKTHRNEESVRQTIFS VIHHFFNGIDAMPIELGEPVDTLITELSELKSMHLSYTERQRLTNFLFVQTKRIRQGNVVKKIVDKDCAKEKLDFLEPLR DLWGLEEPDLIQEAWYLNIYFMVNELAPFEIEKCGNQPPLKVIQTLVEKQLDFLHQIFEGLEVDGQLAEIRQELLETNLK VFSPFYFSETFVDPTKVPFFSETYPEIDEMVKQILAYVGEQRKLRLDKDTLTQLYYTYMLILLEHLPVQLVSSVVKITVD FSNGKVFTKYITSQLQQFAPLNIEISKRLEDDTDIFLSDQRFYDVDCEQMIWESPPLAEDWEQLGDLIVKIKQNDKKIIN S >Mature_481_residues MIEKFNRLLDDEQQLVLQLAELYIHDSEKRLSIGYVQDELGVSRHQVLGAFDLLKSTITALRIENIDLEYDGKGVLLIYG LTTTSMKTILENMATRSIRLNIFINSQLGIYGTQAQFLKQFGISRATYYRNIIYIRQILSEEFFNKTHRNEESVRQTIFS VIHHFFNGIDAMPIELGEPVDTLITELSELKSMHLSYTERQRLTNFLFVQTKRIRQGNVVKKIVDKDCAKEKLDFLEPLR DLWGLEEPDLIQEAWYLNIYFMVNELAPFEIEKCGNQPPLKVIQTLVEKQLDFLHQIFEGLEVDGQLAEIRQELLETNLK VFSPFYFSETFVDPTKVPFFSETYPEIDEMVKQILAYVGEQRKLRLDKDTLTQLYYTYMLILLEHLPVQLVSSVVKITVD FSNGKVFTKYITSQLQQFAPLNIEISKRLEDDTDIFLSDQRFYDVDCEQMIWESPPLAEDWEQLGDLIVKIKQNDKKIIN S
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56270; Mature: 56270
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEKFNRLLDDEQQLVLQLAELYIHDSEKRLSIGYVQDELGVSRHQVLGAFDLLKSTITA CCCHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHH LRIENIDLEYDGKGVLLIYGLTTTSMKTILENMATRSIRLNIFINSQLGIYGTQAQFLKQ HHEECCCEEECCCEEEEEEECCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHH FGISRATYYRNIIYIRQILSEEFFNKTHRNEESVRQTIFSVIHHFFNGIDAMPIELGEPV HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH DTLITELSELKSMHLSYTERQRLTNFLFVQTKRIRQGNVVKKIVDKDCAKEKLDFLEPLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH DLWGLEEPDLIQEAWYLNIYFMVNELAPFEIEKCGNQPPLKVIQTLVEKQLDFLHQIFEG HHHCCCCCHHHHHHHHHEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LEVDGQLAEIRQELLETNLKVFSPFYFSETFVDPTKVPFFSETYPEIDEMVKQILAYVGE CCCCCHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC QRKLRLDKDTLTQLYYTYMLILLEHLPVQLVSSVVKITVDFSNGKVFTKYITSQLQQFAP CCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEEECCCCEEHHHHHHHHHHHHCC LNIEISKRLEDDTDIFLSDQRFYDVDCEQMIWESPPLAEDWEQLGDLIVKIKQNDKKIIN CCEEECCCCCCCCCEEECCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHCC S C >Mature Secondary Structure MIEKFNRLLDDEQQLVLQLAELYIHDSEKRLSIGYVQDELGVSRHQVLGAFDLLKSTITA CCCHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHH LRIENIDLEYDGKGVLLIYGLTTTSMKTILENMATRSIRLNIFINSQLGIYGTQAQFLKQ HHEECCCEEECCCEEEEEEECCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHH FGISRATYYRNIIYIRQILSEEFFNKTHRNEESVRQTIFSVIHHFFNGIDAMPIELGEPV HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH DTLITELSELKSMHLSYTERQRLTNFLFVQTKRIRQGNVVKKIVDKDCAKEKLDFLEPLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH DLWGLEEPDLIQEAWYLNIYFMVNELAPFEIEKCGNQPPLKVIQTLVEKQLDFLHQIFEG HHHCCCCCHHHHHHHHHEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LEVDGQLAEIRQELLETNLKVFSPFYFSETFVDPTKVPFFSETYPEIDEMVKQILAYVGE CCCCCHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC QRKLRLDKDTLTQLYYTYMLILLEHLPVQLVSSVVKITVDFSNGKVFTKYITSQLQQFAP CCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEEECCCCEEHHHHHHHHHHHHCC LNIEISKRLEDDTDIFLSDQRFYDVDCEQMIWESPPLAEDWEQLGDLIVKIKQNDKKIIN CCEEECCCCCCCCCEEECCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA