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The map label for this gene is 116491936

Identifier: 116491936

GI number: 116491936

Start: 145419

End: 145868

Strand: Reverse

Name: 116491936

Synonym: PEPE_0122

Alternate gene names: NA

Gene position: 145868-145419 (Counterclockwise)

Preceding gene: 116491937

Following gene: 116491935

Centisome position: 7.96

GC content: 34.89

Gene sequence:

>450_bases
TTGAAAATGCGAGTTGAAATTGATCCAAATATTAAAGAGGGCGAAGTCATTATTCGAGCGCCCGAGTTTACTAAAAACAT
TACAGAAATTCAGGAATTAATAAAAAGACAAAATGCTACGCAAAAAGTTATGACCTTTTATTCCGGTTCCACTGAATTTT
ACCTAGAAGTTGGCGATATTTTATTCTTTGAGACCGAGGATCGACAAGTCCGTGCCCACACTGAAAATCAGCTTTATACA
ACGCATCAGCGACTATACGAGCTAGAGGAAAACCTTCCTATTGAGTTCATTCGTATCTCTAAATCTTGTATTGTCAATGT
TAATAAAATCTTAGCGTTAACTAAATCATTGTCGAACTGCTTAGTCCAATTTCAAAACTCGCATAAACAAGTTTATGCAT
CTCGTCGGTACTATAAATCATTACAAGAACATTTAAAAAAGTTGAGGTAA

Upstream 100 bases:

>100_bases
AGTTTTTTGACCGCCTAGTCGCTTAATCCAACCACTTATCCCTTACCCATTTACCCGCTCTCTTTTTTATGATGTACTTA
GTAGGAAAGGATGATCGACA

Downstream 100 bases:

>100_bases
TTAATTATGAAAAAATCACAATGGTTTTGGGGCACATTATTCGTTTTAGCTGCGGCTGTTTTAGTAGCAACGCAGATGGG
TTGGACGGCGTTCACCTTAA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKMRVEIDPNIKEGEVIIRAPEFTKNITEIQELIKRQNATQKVMTFYSGSTEFYLEVGDILFFETEDRQVRAHTENQLYT
THQRLYELEENLPIEFIRISKSCIVNVNKILALTKSLSNCLVQFQNSHKQVYASRRYYKSLQEHLKKLR

Sequences:

>Translated_149_residues
MKMRVEIDPNIKEGEVIIRAPEFTKNITEIQELIKRQNATQKVMTFYSGSTEFYLEVGDILFFETEDRQVRAHTENQLYT
THQRLYELEENLPIEFIRISKSCIVNVNKILALTKSLSNCLVQFQNSHKQVYASRRYYKSLQEHLKKLR
>Mature_149_residues
MKMRVEIDPNIKEGEVIIRAPEFTKNITEIQELIKRQNATQKVMTFYSGSTEFYLEVGDILFFETEDRQVRAHTENQLYT
THQRLYELEENLPIEFIRISKSCIVNVNKILALTKSLSNCLVQFQNSHKQVYASRRYYKSLQEHLKKLR

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH LytTR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 17719; Mature: 17719

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMRVEIDPNIKEGEVIIRAPEFTKNITEIQELIKRQNATQKVMTFYSGSTEFYLEVGDI
CCEEEEECCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCE
LFFETEDRQVRAHTENQLYTTHQRLYELEENLPIEFIRISKSCIVNVNKILALTKSLSNC
EEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
LVQFQNSHKQVYASRRYYKSLQEHLKKLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKMRVEIDPNIKEGEVIIRAPEFTKNITEIQELIKRQNATQKVMTFYSGSTEFYLEVGDI
CCEEEEECCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCE
LFFETEDRQVRAHTENQLYTTHQRLYELEENLPIEFIRISKSCIVNVNKILALTKSLSNC
EEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
LVQFQNSHKQVYASRRYYKSLQEHLKKLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]