| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is yhcG [H]
Identifier: 116491871
GI number: 116491871
Start: 48900
End: 49604
Strand: Reverse
Name: yhcG [H]
Synonym: PEPE_0053
Alternate gene names: 116491871
Gene position: 49604-48900 (Counterclockwise)
Preceding gene: 116491872
Following gene: 116491870
Centisome position: 2.71
GC content: 38.3
Gene sequence:
>705_bases ATGGCTAATCTACTAACAATTAATCATTTAAGCTATTCTCGTAATCTCCAATTAATCCTAAAAGACCTCAATTTAGAGCT TCCGTACGGGCAAATTGTAGGCTTGTTGGGTACCAATGGTGCTGGTAAAACGACGTTAATGCGTTTGATTGCTGGAAATT ATATTGATCGTAAAAATTCTATTTCCATTAATACAGAAACCAATAGCGCAGTTCGCAAATCTTTAGTTAGTTTTACCGAA CAAGTCGGTGGCTGGTCGGGCCATCCTCGTATTTTCAAAATTGGTAATTTTTACGATGCTTTATATGAAGATTTCAACCT CACCACTTTCAACCAATTACTTTCAAATCTCAACTTGAGCCCTGACCAACGTGTTAATCAACTTTCTAAAGGGAATTTCC GCAAGTTAGTAATTGCTGTTACGCTTGCTCGTCAAACTGATTTGTACCTATTAGATGAACCTTTCGACGGGATTGACAGT ATGACTCGCAAAAAAATCATCTCCAGTATTATTCAATGGAAGCCTGAAAATGCGACGGTTTTAGTCAGCGATCATCATGT CGGTGATATTGCTAACCTGCTCGATCAAGTCGTCATTATTAAGGACCAACATGTAGCTGCACAAGAGGCCGCAGACACTA TTCGTGAAACCCTTGGTAAAGATATTGAAACTTACTACGAAGATTTTTATAGAGAGGAGCTTTAA
Upstream 100 bases:
>100_bases CTTTCTTTAATGTACGATCACCTAGCCAGCCTCCAACTGACCCCAGACGAGATGATTCAAGCATTAACTGAATACGTGAA CAAGAGAAAGGAAACGCATC
Downstream 100 bases:
>100_bases GATGACCACTTTCTCACAATTAACGAAAACAATGTTGAAAACCCGAGTAAATCTTATTCATAAGGTCTTTGGCATCTATC TACTAGTTACCCTAGTCACT
Product: ABC transporter ATPase
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MANLLTINHLSYSRNLQLILKDLNLELPYGQIVGLLGTNGAGKTTLMRLIAGNYIDRKNSISINTETNSAVRKSLVSFTE QVGGWSGHPRIFKIGNFYDALYEDFNLTTFNQLLSNLNLSPDQRVNQLSKGNFRKLVIAVTLARQTDLYLLDEPFDGIDS MTRKKIISSIIQWKPENATVLVSDHHVGDIANLLDQVVIIKDQHVAAQEAADTIRETLGKDIETYYEDFYREEL
Sequences:
>Translated_234_residues MANLLTINHLSYSRNLQLILKDLNLELPYGQIVGLLGTNGAGKTTLMRLIAGNYIDRKNSISINTETNSAVRKSLVSFTE QVGGWSGHPRIFKIGNFYDALYEDFNLTTFNQLLSNLNLSPDQRVNQLSKGNFRKLVIAVTLARQTDLYLLDEPFDGIDS MTRKKIISSIIQWKPENATVLVSDHHVGDIANLLDQVVIIKDQHVAAQEAADTIRETLGKDIETYYEDFYREEL >Mature_233_residues ANLLTINHLSYSRNLQLILKDLNLELPYGQIVGLLGTNGAGKTTLMRLIAGNYIDRKNSISINTETNSAVRKSLVSFTEQ VGGWSGHPRIFKIGNFYDALYEDFNLTTFNQLLSNLNLSPDQRVNQLSKGNFRKLVIAVTLARQTDLYLLDEPFDGIDSM TRKKIISSIIQWKPENATVLVSDHHVGDIANLLDQVVIIKDQHVAAQEAADTIRETLGKDIETYYEDFYREEL
Specific function: Part Of The Abc Transporter Complex Cysawtp Involved In Sulfate/Thiosulfate Import. Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=226, Percent_Identity=27.8761061946903, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI30795238, Length=226, Percent_Identity=27.8761061946903, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI47078218, Length=219, Percent_Identity=27.8538812785388, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=219, Percent_Identity=27.8538812785388, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI21536376, Length=220, Percent_Identity=24.5454545454545, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI150417984, Length=214, Percent_Identity=25.7009345794392, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI116734710, Length=193, Percent_Identity=29.5336787564767, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=28.5046728971963, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786563, Length=202, Percent_Identity=27.2277227722772, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1789593, Length=216, Percent_Identity=26.3888888888889, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789586, Length=229, Percent_Identity=26.2008733624454, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI2367384, Length=193, Percent_Identity=30.0518134715026, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787112, Length=211, Percent_Identity=25.5924170616114, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87081782, Length=204, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=25.2212389380531, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007184, Length=218, Percent_Identity=27.0642201834862, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI221500365, Length=218, Percent_Identity=27.0642201834862, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=27.9620853080569, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=27.9620853080569, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI281362751, Length=211, Percent_Identity=27.9620853080569, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574150, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI62484234, Length=219, Percent_Identity=25.5707762557078, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24648314, Length=215, Percent_Identity=25.1162790697674, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: 3.6.3.25 [C]
Molecular weight: Translated: 26418; Mature: 26287
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: PS00014 ER_TARGET ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANLLTINHLSYSRNLQLILKDLNLELPYGQIVGLLGTNGAGKTTLMRLIAGNYIDRKNS CCCEEEEECCCCCCCHHHHHHHCCCCCCHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCC ISINTETNSAVRKSLVSFTEQVGGWSGHPRIFKIGNFYDALYEDFNLTTFNQLLSNLNLS EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHCCCC PDQRVNQLSKGNFRKLVIAVTLARQTDLYLLDEPFDGIDSMTRKKIISSIIQWKPENATV HHHHHHHHCCCCHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE LVSDHHVGDIANLLDQVVIIKDQHVAAQEAADTIRETLGKDIETYYEDFYREEL EEECCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure ANLLTINHLSYSRNLQLILKDLNLELPYGQIVGLLGTNGAGKTTLMRLIAGNYIDRKNS CCEEEEECCCCCCCHHHHHHHCCCCCCHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCC ISINTETNSAVRKSLVSFTEQVGGWSGHPRIFKIGNFYDALYEDFNLTTFNQLLSNLNLS EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHCCCC PDQRVNQLSKGNFRKLVIAVTLARQTDLYLLDEPFDGIDSMTRKKIISSIIQWKPENATV HHHHHHHHCCCCHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE LVSDHHVGDIANLLDQVVIIKDQHVAAQEAADTIRETLGKDIETYYEDFYREEL EEECCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]