| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116491848
Identifier: 116491848
GI number: 116491848
Start: 28732
End: 30021
Strand: Direct
Name: 116491848
Synonym: PEPE_0030
Alternate gene names: NA
Gene position: 28732-30021 (Clockwise)
Preceding gene: 116491847
Following gene: 116491849
Centisome position: 1.57
GC content: 35.35
Gene sequence:
>1290_bases ATGAATAAAAAAAGAATCACTGGTGCAGCTTTAGCTACTGCGCTTTTATTTGCACCTTTAGCTATCCAAACTTCTACAGC AATGGCCGATAGTTTTTATACACAACAAACCAATGCTGAACGTGCCGATATTACTAACTGGGTAGCTAATACGACTGAAG ACATTAGTAATAATATTAGTGCTCAACATATTGATACTAACAATTTGCATGGAAATAAATACGTAATTCAATGGGGAGAC ACACTTTCTGGTATTTCAGATGCTACAGGCATCTCCATGGCTAAATTAGCTTATGATAATAATATACAAAATATCGACTT AATCTACGCTGGTGATACCTTAGTTCTAAATCGTGATGGTGAAGTACCATCGGATTGGCACTATTATGGTGATGGTGTTT ATGTTGCTAAGACCAAGGTAACTATCAATAACTTCGTTGATAATAGCCATAACACGGTAAACATTAATGTTTCACCAATA AGTCATGAAGAAGGAAGTTCATCTAGTAAATCAAAAGATGATAGTAACGAATATATATCTGATTTAGATCCAGATGGTAA GAAGGGTGAAGCAGCTAGTGATACTGATAGTTCATCAGATTCTAAATCAAGTTCTAAGAATCATCATTCAGATTCTAAAT CAGATAGCGATGAAATGGATGAAAGTGACTTCTCAGATGCAGTTAGCAATGAAGTATCTAGTAAGTTAGGTTTGAATGAT GGCAAGCTAACTGTAGACTTCACTGGTAAAGATGATGACTCTGATTCAGATGTTAATACTGATGATACAAGTGACGACTC TGATTCAGATACAGAAGATGTTTATGATAATAATCAAAATATTTCAACCGGTAGTGATAAGCTTACAGATGAAAACGCTG AAAAATTAGCTGACAAGATTGTTGCACAACTTAAGGCTGATGGTAAGACTAAAGATATCGATAAAGCGGATAATGTTGAA TTGATGATTGAAGCTAACGATGATGACTTTAGTTTCAACGTAACTTTAACAACTACCGATGATTCCGATTCAGATGAAGA CAGCAATAGTGATGATAGTGATGCTGATACAGATAGTGAAGGTGCAGATTCAGAAGATACCGATACAGATTCAGAAGACG TAGACTCAAGTTCTGATGAAAGCTCCGATGAAGATACTGACTTTGATGACGAATCAGAAGACGCTGATACAGATACTGAA GATGAAGATCAAAACTCAAGTTCTGAAGACGAAGATAGTAATAACCAAGTCACAACTAATGATGACGAAAATACAGATAC TGAAGAATAA
Upstream 100 bases:
>100_bases CTTTTTTACTCTATGGTATAAAAGTCATTGAGTATTAGGAAGTAAAAGCTTACTATAAAAGGTATATATAGTAATTAAAA AGTCTTTTGGAGGAGTTTTT
Downstream 100 bases:
>100_bases TTAACCGAGAGGAACTTTGGCTGATGAAGAAGAAATGGACAATTATTGGGATCATCGTTGCTGTGATCGTAATCGTATGT GGCGGTGTGTACTGGAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MNKKRITGAALATALLFAPLAIQTSTAMADSFYTQQTNAERADITNWVANTTEDISNNISAQHIDTNNLHGNKYVIQWGD TLSGISDATGISMAKLAYDNNIQNIDLIYAGDTLVLNRDGEVPSDWHYYGDGVYVAKTKVTINNFVDNSHNTVNINVSPI SHEEGSSSSKSKDDSNEYISDLDPDGKKGEAASDTDSSSDSKSSSKNHHSDSKSDSDEMDESDFSDAVSNEVSSKLGLND GKLTVDFTGKDDDSDSDVNTDDTSDDSDSDTEDVYDNNQNISTGSDKLTDENAEKLADKIVAQLKADGKTKDIDKADNVE LMIEANDDDFSFNVTLTTTDDSDSDEDSNSDDSDADTDSEGADSEDTDTDSEDVDSSSDESSDEDTDFDDESEDADTDTE DEDQNSSSEDEDSNNQVTTNDDENTDTEE
Sequences:
>Translated_429_residues MNKKRITGAALATALLFAPLAIQTSTAMADSFYTQQTNAERADITNWVANTTEDISNNISAQHIDTNNLHGNKYVIQWGD TLSGISDATGISMAKLAYDNNIQNIDLIYAGDTLVLNRDGEVPSDWHYYGDGVYVAKTKVTINNFVDNSHNTVNINVSPI SHEEGSSSSKSKDDSNEYISDLDPDGKKGEAASDTDSSSDSKSSSKNHHSDSKSDSDEMDESDFSDAVSNEVSSKLGLND GKLTVDFTGKDDDSDSDVNTDDTSDDSDSDTEDVYDNNQNISTGSDKLTDENAEKLADKIVAQLKADGKTKDIDKADNVE LMIEANDDDFSFNVTLTTTDDSDSDEDSNSDDSDADTDSEGADSEDTDTDSEDVDSSSDESSDEDTDFDDESEDADTDTE DEDQNSSSEDEDSNNQVTTNDDENTDTEE >Mature_429_residues MNKKRITGAALATALLFAPLAIQTSTAMADSFYTQQTNAERADITNWVANTTEDISNNISAQHIDTNNLHGNKYVIQWGD TLSGISDATGISMAKLAYDNNIQNIDLIYAGDTLVLNRDGEVPSDWHYYGDGVYVAKTKVTINNFVDNSHNTVNINVSPI SHEEGSSSSKSKDDSNEYISDLDPDGKKGEAASDTDSSSDSKSSSKNHHSDSKSDSDEMDESDFSDAVSNEVSSKLGLND GKLTVDFTGKDDDSDSDVNTDDTSDDSDSDTEDVYDNNQNISTGSDKLTDENAEKLADKIVAQLKADGKTKDIDKADNVE LMIEANDDDFSFNVTLTTTDDSDSDEDSNSDDSDADTDSEGADSEDTDTDSEDVDSSSDESSDEDTDFDDESEDADTDTE DEDQNSSSEDEDSNNQVTTNDDENTDTEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46427; Mature: 46427
Theoretical pI: Translated: 3.57; Mature: 3.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKRITGAALATALLFAPLAIQTSTAMADSFYTQQTNAERADITNWVANTTEDISNNIS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCC AQHIDTNNLHGNKYVIQWGDTLSGISDATGISMAKLAYDNNIQNIDLIYAGDTLVLNRDG EEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEECCC EVPSDWHYYGDGVYVAKTKVTINNFVDNSHNTVNINVSPISHEEGSSSSKSKDDSNEYIS CCCCCCEEECCEEEEEEEEEEEEHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH DLDPDGKKGEAASDTDSSSDSKSSSKNHHSDSKSDSDEMDESDFSDAVSNEVSSKLGLND HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCC GKLTVDFTGKDDDSDSDVNTDDTSDDSDSDTEDVYDNNQNISTGSDKLTDENAEKLADKI CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH VAQLKADGKTKDIDKADNVELMIEANDDDFSFNVTLTTTDDSDSDEDSNSDDSDADTDSE HHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC GADSEDTDTDSEDVDSSSDESSDEDTDFDDESEDADTDTEDEDQNSSSEDEDSNNQVTTN CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC DDENTDTEE CCCCCCCCC >Mature Secondary Structure MNKKRITGAALATALLFAPLAIQTSTAMADSFYTQQTNAERADITNWVANTTEDISNNIS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCC AQHIDTNNLHGNKYVIQWGDTLSGISDATGISMAKLAYDNNIQNIDLIYAGDTLVLNRDG EEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEECCC EVPSDWHYYGDGVYVAKTKVTINNFVDNSHNTVNINVSPISHEEGSSSSKSKDDSNEYIS CCCCCCEEECCEEEEEEEEEEEEHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH DLDPDGKKGEAASDTDSSSDSKSSSKNHHSDSKSDSDEMDESDFSDAVSNEVSSKLGLND HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCC GKLTVDFTGKDDDSDSDVNTDDTSDDSDSDTEDVYDNNQNISTGSDKLTDENAEKLADKI CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH VAQLKADGKTKDIDKADNVELMIEANDDDFSFNVTLTTTDDSDSDEDSNSDDSDADTDSE HHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC GADSEDTDTDSEDVDSSSDESSDEDTDFDDESEDADTDTEDEDQNSSSEDEDSNNQVTTN CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC DDENTDTEE CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA