Click here to switch to the map view.

The map label for this gene is 116332674

Identifier: 116332674

GI number: 116332674

Start: 290982

End: 292532

Strand: Direct

Name: 116332674

Synonym: LBJ_4257

Alternate gene names: NA

Gene position: 290982-292532 (Clockwise)

Preceding gene: 116332669

Following gene: NA

Centisome position: 97.07

GC content: 38.68

Gene sequence:

>1551_bases
ATGTTACGATACGTTTTCAGTTTAATTTTATTTTTTGCCTCTCTTCTTTTTTCTTTAGCCCTCAGCCCGCAAGAAATCTA
TCTTAACTCGGATATCCTTTACCTTCCCACACTCGCCTTGGACGTATTGGCTGACGGAGGAAATTTTCTTTCCTGGTCCT
TTACCCCTTCCCCCTATTTTTTTCCGGATTTTTTGATTATATCCGTTCTTCTTTTGATTTTTGAAAACGCGCAAAAGGCA
TTAATTTGTTTCGCATTTTTACAAACGATCTTGTTTACCATTTTGATGGAACGTTTTTGGCTTTTCGCAAGAGAAGAAAG
AAAAGGAAAACCTCTTTCTTCCAAAGAAATAAGGCGAGTCAGATCTTGGATTTTACTGCTTATTTCGCTTTTACTTTTGA
TCGCAAAAAATTTTCCAACTCTTTATATTATATTTTTACCCTCTATTCATACGAGCGCGTTTCTCGTAACCCTATACGCC
TGGCCGCTGATCCATAAAACATTCAAAAAACGTCAAGTATGGATCTTAATCCTTTGGATTACACTCACAGTCGCATCCGA
TCGCATCCTACTCGTAGAGTTGATTGTTCCCGGAATTCTGGCAGAATTCCTATTCCCTTCTCAGGCACCAAAGAACCAAA
GATCGGGATGGAAGCGCTTATTCCCGGAAAGCTCCAAAATTCTGATCATTTCGGGGATTGCAGGGTTGATCTTACATGAG
GTTCTCAAATCTTTTTTGTTCATCGAAAGGTCGGGAAAAATTCCCATCAACCTTTCTCTGACTCGAGCAGTAATGGACGG
TACCCGTTTTTTTATGGAGGCACAGGCTTGGATTCTTTCCGGATTCAAGGGCAAGGTCCCAATTCCTGCAATTTTAATTT
CGATCCTAATCATTGCATTGGCTCTTAGTTTGGTAAGGATTAAAAAATCAAAATCGACCGCATTTTTATTTTTCTTATTC
GCGATTCTTTTTTTTGCACCGATTTTAACCGGATTGTATATCGACGAGTATAGCCTACGTTATGTGTCTCCTGCTTTGAT
TTTGGCCCCATTTTTACTACTCTCTATAACCGAGTTTTCAAAGCGAACTTTGACGCCGATAATCTTCTTTCTTTTATTCA
TTTTACTCTTGTTTATAAGACAAAAAACACCTCAAAATATCGAGGATTCGTTTTATCGTCTTTTCCGGACAGTACCACAG
GAAGCGCAATGTGTGGATGAAATTTCCGAAAAAACGCCGATTTCACTCGTTATTTCCGACTTTTGGACCGCAAAAAGAAT
CCGAGTTTTTTCCAAAAAGAGAATTCCATCGATTCATGTTGCATATGGAACATTAGAAGGTTCTCATACGATTTCAAATC
GAGAATGGTATCTCAAAAACTATCCGGGAACTGTCGCTGTTTTTACCCAAGGATTAGGAGAAAATCGTATCCAAGAAATA
TATGGAACACCGACCGAAAATACGCAGTGTGGAGAATTAAAAATTTATTTCTACGCAGATTTCCGTAAAATCGGACCGAC
CTTGCGCAAACCTTTTCAAAAAACGAAATAA

Upstream 100 bases:

>100_bases
TTCTTAAAGTCCAAGCTTATGTCCAGGAACTTCTTTTTTAACTTTACCCTTGATGGATGTATGAAAACAATACTATGATC
AGTTTGTTTCAAAAGTCAAA

Downstream 100 bases:

>100_bases
AGAAAGGGTTTCGTTTCCACGGTCAAAACAACACCCGTAATAAAGCCCAAAGCGCTTAAAAAAGCAAAAAGGCTCCAATG
AAGATCTTCCCTAAAACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MLRYVFSLILFFASLLFSLALSPQEIYLNSDILYLPTLALDVLADGGNFLSWSFTPSPYFFPDFLIISVLLLIFENAQKA
LICFAFLQTILFTILMERFWLFAREERKGKPLSSKEIRRVRSWILLLISLLLLIAKNFPTLYIIFLPSIHTSAFLVTLYA
WPLIHKTFKKRQVWILILWITLTVASDRILLVELIVPGILAEFLFPSQAPKNQRSGWKRLFPESSKILIISGIAGLILHE
VLKSFLFIERSGKIPINLSLTRAVMDGTRFFMEAQAWILSGFKGKVPIPAILISILIIALALSLVRIKKSKSTAFLFFLF
AILFFAPILTGLYIDEYSLRYVSPALILAPFLLLSITEFSKRTLTPIIFFLLFILLLFIRQKTPQNIEDSFYRLFRTVPQ
EAQCVDEISEKTPISLVISDFWTAKRIRVFSKKRIPSIHVAYGTLEGSHTISNREWYLKNYPGTVAVFTQGLGENRIQEI
YGTPTENTQCGELKIYFYADFRKIGPTLRKPFQKTK

Sequences:

>Translated_516_residues
MLRYVFSLILFFASLLFSLALSPQEIYLNSDILYLPTLALDVLADGGNFLSWSFTPSPYFFPDFLIISVLLLIFENAQKA
LICFAFLQTILFTILMERFWLFAREERKGKPLSSKEIRRVRSWILLLISLLLLIAKNFPTLYIIFLPSIHTSAFLVTLYA
WPLIHKTFKKRQVWILILWITLTVASDRILLVELIVPGILAEFLFPSQAPKNQRSGWKRLFPESSKILIISGIAGLILHE
VLKSFLFIERSGKIPINLSLTRAVMDGTRFFMEAQAWILSGFKGKVPIPAILISILIIALALSLVRIKKSKSTAFLFFLF
AILFFAPILTGLYIDEYSLRYVSPALILAPFLLLSITEFSKRTLTPIIFFLLFILLLFIRQKTPQNIEDSFYRLFRTVPQ
EAQCVDEISEKTPISLVISDFWTAKRIRVFSKKRIPSIHVAYGTLEGSHTISNREWYLKNYPGTVAVFTQGLGENRIQEI
YGTPTENTQCGELKIYFYADFRKIGPTLRKPFQKTK
>Mature_516_residues
MLRYVFSLILFFASLLFSLALSPQEIYLNSDILYLPTLALDVLADGGNFLSWSFTPSPYFFPDFLIISVLLLIFENAQKA
LICFAFLQTILFTILMERFWLFAREERKGKPLSSKEIRRVRSWILLLISLLLLIAKNFPTLYIIFLPSIHTSAFLVTLYA
WPLIHKTFKKRQVWILILWITLTVASDRILLVELIVPGILAEFLFPSQAPKNQRSGWKRLFPESSKILIISGIAGLILHE
VLKSFLFIERSGKIPINLSLTRAVMDGTRFFMEAQAWILSGFKGKVPIPAILISILIIALALSLVRIKKSKSTAFLFFLF
AILFFAPILTGLYIDEYSLRYVSPALILAPFLLLSITEFSKRTLTPIIFFLLFILLLFIRQKTPQNIEDSFYRLFRTVPQ
EAQCVDEISEKTPISLVISDFWTAKRIRVFSKKRIPSIHVAYGTLEGSHTISNREWYLKNYPGTVAVFTQGLGENRIQEI
YGTPTENTQCGELKIYFYADFRKIGPTLRKPFQKTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59351; Mature: 59351

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00555 ICOSAH_VIR_COAT_S

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYVFSLILFFASLLFSLALSPQEIYLNSDILYLPTLALDVLADGGNFLSWSFTPSPYF
CHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
FPDFLIISVLLLIFENAQKALICFAFLQTILFTILMERFWLFAREERKGKPLSSKEIRRV
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RSWILLLISLLLLIAKNFPTLYIIFLPSIHTSAFLVTLYAWPLIHKTFKKRQVWILILWI
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHEEEHEEH
TLTVASDRILLVELIVPGILAEFLFPSQAPKNQRSGWKRLFPESSKILIISGIAGLILHE
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHH
VLKSFLFIERSGKIPINLSLTRAVMDGTRFFMEAQAWILSGFKGKVPIPAILISILIIAL
HHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ALSLVRIKKSKSTAFLFFLFAILFFAPILTGLYIDEYSLRYVSPALILAPFLLLSITEFS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHH
KRTLTPIIFFLLFILLLFIRQKTPQNIEDSFYRLFRTVPQEAQCVDEISEKTPISLVISD
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHH
FWTAKRIRVFSKKRIPSIHVAYGTLEGSHTISNREWYLKNYPGTVAVFTQGLGENRIQEI
HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHH
YGTPTENTQCGELKIYFYADFRKIGPTLRKPFQKTK
CCCCCCCCCCCEEEEEEEECHHHHCHHHHCCCCCCC
>Mature Secondary Structure
MLRYVFSLILFFASLLFSLALSPQEIYLNSDILYLPTLALDVLADGGNFLSWSFTPSPYF
CHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
FPDFLIISVLLLIFENAQKALICFAFLQTILFTILMERFWLFAREERKGKPLSSKEIRRV
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RSWILLLISLLLLIAKNFPTLYIIFLPSIHTSAFLVTLYAWPLIHKTFKKRQVWILILWI
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHEEEHEEH
TLTVASDRILLVELIVPGILAEFLFPSQAPKNQRSGWKRLFPESSKILIISGIAGLILHE
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHH
VLKSFLFIERSGKIPINLSLTRAVMDGTRFFMEAQAWILSGFKGKVPIPAILISILIIAL
HHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ALSLVRIKKSKSTAFLFFLFAILFFAPILTGLYIDEYSLRYVSPALILAPFLLLSITEFS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHH
KRTLTPIIFFLLFILLLFIRQKTPQNIEDSFYRLFRTVPQEAQCVDEISEKTPISLVISD
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHH
FWTAKRIRVFSKKRIPSIHVAYGTLEGSHTISNREWYLKNYPGTVAVFTQGLGENRIQEI
HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHH
YGTPTENTQCGELKIYFYADFRKIGPTLRKPFQKTK
CCCCCCCCCCCEEEEEEEECHHHHCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA