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The map label for this gene is epsC [H]

Identifier: 116332602

GI number: 116332602

Start: 201364

End: 203256

Strand: Reverse

Name: epsC [H]

Synonym: LBJ_4174

Alternate gene names: 116332602

Gene position: 203256-201364 (Counterclockwise)

Preceding gene: 116332621

Following gene: 116332601

Centisome position: 67.81

GC content: 43.0

Gene sequence:

>1893_bases
ATGCTCGGTCGGTGGAATCGAAGAATGTGGATTTTTCCTTTAGATCTGTTGTTCATGGGAATTTCCTATTTTTTGGCGCA
TTGGATTCGCTTTGAGTCTTTTATTTTTCTTTCGTCACCGGAAAGATTTTTTACCTCTTTGATCATTGTCATTAGCGTCA
GGGCCTGTGTTTTCATTCTCTCCGATATTTACAGGTCCATTTGGGTTTACGCTTCGATACACGATCTTGTGGAAATCATC
AAGGTCACACTTCTCTCCTCTCTAATTTCAACTACGGCACTCTTATTTTACAATCGTTTCGAACAACTTTCCAGAATGGT
TCCCGTTTTGGACACGCTCCTTCTACTCAGTTTTCTTTGTATTCGTAGTTTTTCCTGGAGAGTATTTCGGGATCAGTACA
TTCTCAAAAAATCCAAGGAAGAAGGTCTTCCGACACTGATTCTGGGGGCCGGAAAGATAGGTGCGACTCTGCTTTCGGAA
ATTCGAAGACACAACGAACTCAAACTCAATCCAATCGGATTTTTAGATGATAACGTCCAGAAAATCGGAGCGCATATCCA
AGGGGTTCCGATTCTGGCAAAAATCGACCAAGCGGAACAAATGATCAATCGTTTCGGAATAAAACAAGTCATCATCGCCA
TCTCCAATCCGGACGGAAAACTCATCAGTCGGTTGATTCGTTCTTTTGAGAGTACGGATGTGAAGTTTAAAATTCTTCCT
TCTTTGGGCTCTTTGTTTTTTGATTCTCCCAAATTAAATCAACTCAGAGAGGTGCAGGTGGAAGACCTTTTGGGTCGTCC
GGTTGTGGATCTTGAAGTCGAGTCCATTCGTTCCTATCTAAAAGGGAAATCGATTTTGATTACAGGAGCGGGAGGTTCGA
TCGGAAGCGAACTCTGTCGGCAGGTTGCCGTTTTTGAACCGTCTCGAATTCTTCTTTTGGATGCGGCGGAAACACCGTTG
TACGAAATCGAATACGAGCTTGGAAAAAAATTACAAGGACAAAATATAGAACTCGTTCCAATCGTCGCGGATATCAAAAA
TCTTTCCAGAGTCAGTTCTATTTTTGAAAAACATTCTCCCGAAGTTGTATTTCATTCGGCCGCTTACAAGCACGTTCCGA
TGATGGAAGTCAACCCGACCGAAGCAGTGATGAATAACGTGTTGGGCACAAAAAACGTCGCCGATATTTCCAGGCTTTCG
GGGGTGGAACGTTTTGTTTTAATCTCCACGGATAAGGCGGTCAATCCCGTGAACATTATGGGCGCTTCCAAACGTGCGGC
GGAATTGTATTTACAACATGTTTCCCGAGAAACAAAAACCAAGTTTATTACGGTTCGATTCGGAAATGTTCTCGGTTCCA
ACGGATCTGTGATTCCAAGGTTTAGGGAGCAAATCGCAAACGGTGGTCCGGTTACCGTCACACATCCCGATGTAATCCGT
TATTTTATGACAATTCCGGAAGCGACTCAGTTAGTTCTCCAAGCTGGAAGTATGGGAGAATGCGGAGAGATCTTTATACT
TGAGATGGGGGAGCCAGTAAAAATTCTCAACTTAGCGGAAGAGATGATTCGCCTCTGCGGTCTCAGACCTCATGTGGATA
TACCGATTCAGTTCACCGGACTCAGACCGGGGGAAAAATTATTCGAAGAACTTCTTTTAGATCTGGAAGGAATTAAAAAA
ACTCATCATCCTAAGATCAAAATCGCCGCGCCCTTGGAAAATCAGGAAGTGACTACTTTTGTTGCAAGATTCAACGAACT
TTTGACTGCAGGAAGGATGAACAAGGATATCTTTCTCGCTTTTAAGACTTTGGTTCCGGAATACAAGATCCACGGAGATT
ATTTGAATGAAGCCGTCACGGAAATTTCCGATCAAAATTTGAAGAATGGATAA

Upstream 100 bases:

>100_bases
AAAAGAATTTCTGCAACACATTTTTCGGTTTACCTAAAAATCGGAATGGTCTGTTTCAAAAAGGTTGGACTTTTAGAAAC
GAACGGATTTTATTTCCTAC

Downstream 100 bases:

>100_bases
TCAATATCTAAAAGAAGAAATTCTAACCCTCAGAAAATTCAAACGTTCTTTGTTCCATCTTTACTGGGAAGGATTTGGAA
CCTTCTATCTACATGCTCTT

Product: nucleoside-diphosphate sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MLGRWNRRMWIFPLDLLFMGISYFLAHWIRFESFIFLSSPERFFTSLIIVISVRACVFILSDIYRSIWVYASIHDLVEII
KVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSE
IRRHNELKLNPIGFLDDNVQKIGAHIQGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIRSFESTDVKFKILP
SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITGAGGSIGSELCRQVAVFEPSRILLLDAAETPL
YEIEYELGKKLQGQNIELVPIVADIKNLSRVSSIFEKHSPEVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLS
GVERFVLISTDKAVNPVNIMGASKRAAELYLQHVSRETKTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR
YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTGLRPGEKLFEELLLDLEGIKK
THHPKIKIAAPLENQEVTTFVARFNELLTAGRMNKDIFLAFKTLVPEYKIHGDYLNEAVTEISDQNLKNG

Sequences:

>Translated_630_residues
MLGRWNRRMWIFPLDLLFMGISYFLAHWIRFESFIFLSSPERFFTSLIIVISVRACVFILSDIYRSIWVYASIHDLVEII
KVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSE
IRRHNELKLNPIGFLDDNVQKIGAHIQGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIRSFESTDVKFKILP
SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITGAGGSIGSELCRQVAVFEPSRILLLDAAETPL
YEIEYELGKKLQGQNIELVPIVADIKNLSRVSSIFEKHSPEVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLS
GVERFVLISTDKAVNPVNIMGASKRAAELYLQHVSRETKTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR
YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTGLRPGEKLFEELLLDLEGIKK
THHPKIKIAAPLENQEVTTFVARFNELLTAGRMNKDIFLAFKTLVPEYKIHGDYLNEAVTEISDQNLKNG
>Mature_630_residues
MLGRWNRRMWIFPLDLLFMGISYFLAHWIRFESFIFLSSPERFFTSLIIVISVRACVFILSDIYRSIWVYASIHDLVEII
KVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLCIRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSE
IRRHNELKLNPIGFLDDNVQKIGAHIQGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIRSFESTDVKFKILP
SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITGAGGSIGSELCRQVAVFEPSRILLLDAAETPL
YEIEYELGKKLQGQNIELVPIVADIKNLSRVSSIFEKHSPEVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLS
GVERFVLISTDKAVNPVNIMGASKRAAELYLQHVSRETKTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR
YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTGLRPGEKLFEELLLDLEGIKK
THHPKIKIAAPLENQEVTTFVARFNELLTAGRMNKDIFLAFKTLVPEYKIHGDYLNEAVTEISDQNLKNG

Specific function: Involved in biofilm formation [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

Organism=Homo sapiens, GI7657641, Length=265, Percent_Identity=25.6603773584906, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 70993; Mature: 70993

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRWNRRMWIFPLDLLFMGISYFLAHWIRFESFIFLSSPERFFTSLIIVISVRACVFIL
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHH
SDIYRSIWVYASIHDLVEIIKVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSEIRRHNELKLNPIGFLDDNVQ
HHCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCHHH
KIGAHIQGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIRSFESTDVKFKILP
HHCCHHCCCCCEEHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITGAGGSIGSELCR
HHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEEECCCHHHHHHHH
QVAVFEPSRILLLDAAETPLYEIEYELGKKLQGQNIELVPIVADIKNLSRVSSIFEKHSP
HHHHCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC
EVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLSGVERFVLISTDKAVNPVNIM
CEEEECCHHCCCCCEECCHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEC
GASKRAAELYLQHVSRETKTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR
CCCHHHHHHHHHHHHHHHHCEEEEEEECCEECCCCCCCHHHHHHHCCCCCEEEECHHHHH
YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTG
HHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
LRPGEKLFEELLLDLEGIKKTHHPKIKIAAPLENQEVTTFVARFNELLTAGRMNKDIFLA
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
FKTLVPEYKIHGDYLNEAVTEISDQNLKNG
HHHHCCCCEECHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLGRWNRRMWIFPLDLLFMGISYFLAHWIRFESFIFLSSPERFFTSLIIVISVRACVFIL
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHH
SDIYRSIWVYASIHDLVEIIKVTLLSSLISTTALLFYNRFEQLSRMVPVLDTLLLLSFLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSFSWRVFRDQYILKKSKEEGLPTLILGAGKIGATLLSEIRRHNELKLNPIGFLDDNVQ
HHCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCHHH
KIGAHIQGVPILAKIDQAEQMINRFGIKQVIIAISNPDGKLISRLIRSFESTDVKFKILP
HHCCHHCCCCCEEHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
SLGSLFFDSPKLNQLREVQVEDLLGRPVVDLEVESIRSYLKGKSILITGAGGSIGSELCR
HHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEEECCCHHHHHHHH
QVAVFEPSRILLLDAAETPLYEIEYELGKKLQGQNIELVPIVADIKNLSRVSSIFEKHSP
HHHHCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC
EVVFHSAAYKHVPMMEVNPTEAVMNNVLGTKNVADISRLSGVERFVLISTDKAVNPVNIM
CEEEECCHHCCCCCEECCHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEC
GASKRAAELYLQHVSRETKTKFITVRFGNVLGSNGSVIPRFREQIANGGPVTVTHPDVIR
CCCHHHHHHHHHHHHHHHHCEEEEEEECCEECCCCCCCHHHHHHHCCCCCEEEECHHHHH
YFMTIPEATQLVLQAGSMGECGEIFILEMGEPVKILNLAEEMIRLCGLRPHVDIPIQFTG
HHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
LRPGEKLFEELLLDLEGIKKTHHPKIKIAAPLENQEVTTFVARFNELLTAGRMNKDIFLA
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
FKTLVPEYKIHGDYLNEAVTEISDQNLKNG
HHHHCCCCEECHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]