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The map label for this gene is yxkH [H]

Identifier: 116332518

GI number: 116332518

Start: 93130

End: 94614

Strand: Reverse

Name: yxkH [H]

Synonym: LBJ_4082

Alternate gene names: 116332518

Gene position: 94614-93130 (Counterclockwise)

Preceding gene: 116332519

Following gene: 116332517

Centisome position: 31.56

GC content: 39.66

Gene sequence:

>1485_bases
ATGCAAACAAAACCATTTACAATTCGTTTTAAAACGTTAATTTCCTTTTATCCAAAAAAATGGAACACAATGTTTTGTTT
TCTCACTAATAACATTATGCGCAATATCCTCATCACTCTCACAATCTTTCATCTCTTAGTATCTTCGATTCTTATCGCTT
CTCCTCTGAACGATTTCCTCAACCCTGAGAAAAAAAAGCCGACTACTTCATCTTCAAAAAAAGATAAATCTTCGTACACT
CTCGCAGATTCCTCGCAAAAAACCGTTTTAAAAAAAAATCAAAAAGAAAGAACGGAATCGACTAACGTAGGCCCTGATCA
GTCCGAAGATAAAGCTTCCCGTAAAAAATTTGCAATTAAAAACCGAAAAGAACCCGATTCAAAACGGGAAAATCTCGACA
TTTCCAAGAATTCCAAAAAGAAAAAATACGAAGACGCGCTTCCAACCGTTAAAGAAGATACTCCACCTACTCCTAGTTAT
ACGATTCAGGGAGTCGAATCCGTTTCCGGAGGCGGGATTCCCGTTCTTTGTTATCACCACTTAGCGCCCGAGGGTGGACC
GATGGGAGGTTATAATCTCCATCCGAACCTTTTGGAAGAACAATTTAAGTTTTTGAAAGCTACAGGTTACAAGACGGTTC
GACTAGATCAATTCTACGCTTATATTAACGGTAAAAAAACTTCCGACTTTCCGGACAAACCGATTTTACTGACATTCGAC
GACGGCTCCAAAACACATTTAGAAGTTTTAGTTCCTCTTTTAAAAAAATATGGTTTCACCGCTTCTATCTTCATCTATCC
CTCGATTATTTCTTCGGGGAAAAAATACTACATGACTTGGGAAGAATTAAAAAGGGCTTTGGACAGTGGAGTTTTGGATC
TAGGCTCTCATACTTTATACCATCCGAAACTTCCGATGATGAGTCGGGCGTTAATTCGAAAACAACTCGCGGAATCCAAA
CAAATCTTAGAATCAAAAACAGGTAGAAAGGTAGTCGATCTCGCGTATCCCTTCGGTCTCTTCGATCCGAGAGTAATCGA
GGAAGCGAAAGCAATCGGCTACAGAATGGCGTTTACGGTCAACCCAGGTAAAAATCTTCCGGGAACCCCCATTTACAACA
TACACAGATCCTTAGTTCCTTGGGGACAATCTCAGCCAGCGTTTAATTCCATTCTTACAATGGCGCCTCCTCCAAAGATC
TCTATTTCCATCCAAGACGGATCTTGGGTAAAAGCGGGTCAAGAACTTAAGATCCACCTTGAAGGGGTTCAACCCGAATC
GGTTAGTATCAAGATTAAAAGTAAGAACGTACTCTTAGAAAATCAATCTCCAGATTATACGGTAAAGATCCCAAGTTTCG
CAAAAAAATCCACATTTCTTCCCCTGATGGTGCAAGCTAAAACGAAGGACGGTAAACAAATCCAATATCAGTACCTTTTT
ATCAATCAAAAGGAATTTCAAAAACATCCGGACGGTGATTTTTAA

Upstream 100 bases:

>100_bases
AAATCCTTTGTAAAATTCTGCAATTGAAAACCTCGGGAATCGCTTGCCGGGGAAAGCGGCGTTAAAACACTAACCGAAGA
CCTTTCTCCCGAATTTCAGA

Downstream 100 bases:

>100_bases
ATTCCTGATTGAAGTTATATTACGATCTTTGAAAATATCAAAGCATGAATTTCAAAGACCATTTTTCTTCTCATTCCTCT
TCTTACTCCGAGTTTAGACC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MQTKPFTIRFKTLISFYPKKWNTMFCFLTNNIMRNILITLTIFHLLVSSILIASPLNDFLNPEKKKPTTSSSKKDKSSYT
LADSSQKTVLKKNQKERTESTNVGPDQSEDKASRKKFAIKNRKEPDSKRENLDISKNSKKKKYEDALPTVKEDTPPTPSY
TIQGVESVSGGGIPVLCYHHLAPEGGPMGGYNLHPNLLEEQFKFLKATGYKTVRLDQFYAYINGKKTSDFPDKPILLTFD
DGSKTHLEVLVPLLKKYGFTASIFIYPSIISSGKKYYMTWEELKRALDSGVLDLGSHTLYHPKLPMMSRALIRKQLAESK
QILESKTGRKVVDLAYPFGLFDPRVIEEAKAIGYRMAFTVNPGKNLPGTPIYNIHRSLVPWGQSQPAFNSILTMAPPPKI
SISIQDGSWVKAGQELKIHLEGVQPESVSIKIKSKNVLLENQSPDYTVKIPSFAKKSTFLPLMVQAKTKDGKQIQYQYLF
INQKEFQKHPDGDF

Sequences:

>Translated_494_residues
MQTKPFTIRFKTLISFYPKKWNTMFCFLTNNIMRNILITLTIFHLLVSSILIASPLNDFLNPEKKKPTTSSSKKDKSSYT
LADSSQKTVLKKNQKERTESTNVGPDQSEDKASRKKFAIKNRKEPDSKRENLDISKNSKKKKYEDALPTVKEDTPPTPSY
TIQGVESVSGGGIPVLCYHHLAPEGGPMGGYNLHPNLLEEQFKFLKATGYKTVRLDQFYAYINGKKTSDFPDKPILLTFD
DGSKTHLEVLVPLLKKYGFTASIFIYPSIISSGKKYYMTWEELKRALDSGVLDLGSHTLYHPKLPMMSRALIRKQLAESK
QILESKTGRKVVDLAYPFGLFDPRVIEEAKAIGYRMAFTVNPGKNLPGTPIYNIHRSLVPWGQSQPAFNSILTMAPPPKI
SISIQDGSWVKAGQELKIHLEGVQPESVSIKIKSKNVLLENQSPDYTVKIPSFAKKSTFLPLMVQAKTKDGKQIQYQYLF
INQKEFQKHPDGDF
>Mature_494_residues
MQTKPFTIRFKTLISFYPKKWNTMFCFLTNNIMRNILITLTIFHLLVSSILIASPLNDFLNPEKKKPTTSSSKKDKSSYT
LADSSQKTVLKKNQKERTESTNVGPDQSEDKASRKKFAIKNRKEPDSKRENLDISKNSKKKKYEDALPTVKEDTPPTPSY
TIQGVESVSGGGIPVLCYHHLAPEGGPMGGYNLHPNLLEEQFKFLKATGYKTVRLDQFYAYINGKKTSDFPDKPILLTFD
DGSKTHLEVLVPLLKKYGFTASIFIYPSIISSGKKYYMTWEELKRALDSGVLDLGSHTLYHPKLPMMSRALIRKQLAESK
QILESKTGRKVVDLAYPFGLFDPRVIEEAKAIGYRMAFTVNPGKNLPGTPIYNIHRSLVPWGQSQPAFNSILTMAPPPKI
SISIQDGSWVKAGQELKIHLEGVQPESVSIKIKSKNVLLENQSPDYTVKIPSFAKKSTFLPLMVQAKTKDGKQIQYQYLF
INQKEFQKHPDGDF

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 55886; Mature: 55886

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKPFTIRFKTLISFYPKKWNTMFCFLTNNIMRNILITLTIFHLLVSSILIASPLNDFL
CCCCCEEEEHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPEKKKPTTSSSKKDKSSYTLADSSQKTVLKKNQKERTESTNVGPDQSEDKASRKKFAIK
CCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
NRKEPDSKRENLDISKNSKKKKYEDALPTVKEDTPPTPSYTIQGVESVSGGGIPVLCYHH
CCCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEEEE
LAPEGGPMGGYNLHPNLLEEQFKFLKATGYKTVRLDQFYAYINGKKTSDFPDKPILLTFD
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEC
DGSKTHLEVLVPLLKKYGFTASIFIYPSIISSGKKYYMTWEELKRALDSGVLDLGSHTLY
CCCCHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCEEEEEHHHHHHHHHCCCEECCCCCEE
HPKLPMMSRALIRKQLAESKQILESKTGRKVVDLAYPFGLFDPRVIEEAKAIGYRMAFTV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEE
NPGKNLPGTPIYNIHRSLVPWGQSQPAFNSILTMAPPPKISISIQDGSWVKAGQELKIHL
CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHEEECCCCCCEEEEECCCCCEECCCEEEEEE
EGVQPESVSIKIKSKNVLLENQSPDYTVKIPSFAKKSTFLPLMVQAKTKDGKQIQYQYLF
ECCCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEE
INQKEFQKHPDGDF
EEHHHHHCCCCCCC
>Mature Secondary Structure
MQTKPFTIRFKTLISFYPKKWNTMFCFLTNNIMRNILITLTIFHLLVSSILIASPLNDFL
CCCCCEEEEHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPEKKKPTTSSSKKDKSSYTLADSSQKTVLKKNQKERTESTNVGPDQSEDKASRKKFAIK
CCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
NRKEPDSKRENLDISKNSKKKKYEDALPTVKEDTPPTPSYTIQGVESVSGGGIPVLCYHH
CCCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEEEE
LAPEGGPMGGYNLHPNLLEEQFKFLKATGYKTVRLDQFYAYINGKKTSDFPDKPILLTFD
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEC
DGSKTHLEVLVPLLKKYGFTASIFIYPSIISSGKKYYMTWEELKRALDSGVLDLGSHTLY
CCCCHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCEEEEEHHHHHHHHHCCCEECCCCCEE
HPKLPMMSRALIRKQLAESKQILESKTGRKVVDLAYPFGLFDPRVIEEAKAIGYRMAFTV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEE
NPGKNLPGTPIYNIHRSLVPWGQSQPAFNSILTMAPPPKISISIQDGSWVKAGQELKIHL
CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHEEECCCCCCEEEEECCCCCEECCCEEEEEE
EGVQPESVSIKIKSKNVLLENQSPDYTVKIPSFAKKSTFLPLMVQAKTKDGKQIQYQYLF
ECCCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEE
INQKEFQKHPDGDF
EEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]