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The map label for this gene is spo0J [H]

Identifier: 116332467

GI number: 116332467

Start: 23518

End: 24225

Strand: Direct

Name: spo0J [H]

Synonym: LBJ_4021

Alternate gene names: 116332467

Gene position: 23518-24225 (Clockwise)

Preceding gene: 116332466

Following gene: 116332468

Centisome position: 7.85

GC content: 41.24

Gene sequence:

>708_bases
ATGGCTAAACGTTCGGATTTTGCAGGTATGGATCTTCTTACTGCCTTCGGAGAAAAAGAATCCTCAAGCTCGGAAATACA
AGTTTCGGATATAGTTCCAAATCCATCTCAACCACGCGTATTTGGAAAAGAGGAAGTTTCCGATCTCGTAGAATCCATGA
AACGTTTAGGTTTGATCGAACCTATCGTAGTAAGGAAACAGGGAAAAAAATATCAGATTGTAGCGGGAGAAAGAAGGTAT
CAAGCGGCTAAGGTTCTCAAGTGGAATACGATTACGGCAATCGAAACTTCCGCATCGGAAGATAGATGTTTTGAAATGGC
GCTTGCCGAAAACGAGAAACGTAAAAGCCTGAATCCTTGGGAAGTCGGCCGTGCAATTCAGTTTTTAAGAAAAGAAAAAA
GAAAAACCGCCGAAGAGGTTTCCAAGGTTTTAGGTTTTACCGAAAGATACGTGAAGCAGCTGAGTTCGATTGCGAGGCTT
GATCAAAAGTCGGTGCAGGATTTGATTCGATCCGGGAAGGATCCTTCCGTAAAAAACCTGGAAGCACTTTTAAAACAAAA
AGAAGGCAGGGGGGGTGAAATGATTTCATCCCGAAAATCGGTTCCGACGAAAATGACCATTCAGTTAGTGGGACTTACTT
TGCAGCAGAGAGAAAAATTTCTAAAGGAACTTTCTTCTCTGAAAAAAAAATATGGAATTAAAAACTGA

Upstream 100 bases:

>100_bases
CCCCAGGCCCAGGCCAAGAAAAAACTCTTAGGAGAATACGATAGCAAGGTTATGCAGATGTTTTCTTCTTTGGCGGATGA
ATTGATGGAGAGAATTTCAA

Downstream 100 bases:

>100_bases
TACGGCTTTTAAACGGAAAAATAAATATATGAAATTCGTTGTTATAGCAGGTCCACATCGTAAGGTTTCTCAGTCAGCCA
AGGTCGCAAATTGGATGGGA

Product: ParB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MAKRSDFAGMDLLTAFGEKESSSSEIQVSDIVPNPSQPRVFGKEEVSDLVESMKRLGLIEPIVVRKQGKKYQIVAGERRY
QAAKVLKWNTITAIETSASEDRCFEMALAENEKRKSLNPWEVGRAIQFLRKEKRKTAEEVSKVLGFTERYVKQLSSIARL
DQKSVQDLIRSGKDPSVKNLEALLKQKEGRGGEMISSRKSVPTKMTIQLVGLTLQQREKFLKELSSLKKKYGIKN

Sequences:

>Translated_235_residues
MAKRSDFAGMDLLTAFGEKESSSSEIQVSDIVPNPSQPRVFGKEEVSDLVESMKRLGLIEPIVVRKQGKKYQIVAGERRY
QAAKVLKWNTITAIETSASEDRCFEMALAENEKRKSLNPWEVGRAIQFLRKEKRKTAEEVSKVLGFTERYVKQLSSIARL
DQKSVQDLIRSGKDPSVKNLEALLKQKEGRGGEMISSRKSVPTKMTIQLVGLTLQQREKFLKELSSLKKKYGIKN
>Mature_234_residues
AKRSDFAGMDLLTAFGEKESSSSEIQVSDIVPNPSQPRVFGKEEVSDLVESMKRLGLIEPIVVRKQGKKYQIVAGERRYQ
AAKVLKWNTITAIETSASEDRCFEMALAENEKRKSLNPWEVGRAIQFLRKEKRKTAEEVSKVLGFTERYVKQLSSIARLD
QKSVQDLIRSGKDPSVKNLEALLKQKEGRGGEMISSRKSVPTKMTIQLVGLTLQQREKFLKELSSLKKKYGIKN

Specific function: Required for the initiation of sporulation and for normal chromosome segregation. Antagonizes sporulation inhibition of soj. It probably interacts with a specific DNA site and other proteins involved in partitioning and cell division, and antagonizes soj

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR013741 [H]

Pfam domain/function: PF08535 KorB; PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 26609; Mature: 26478

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRSDFAGMDLLTAFGEKESSSSEIQVSDIVPNPSQPRVFGKEEVSDLVESMKRLGLIE
CCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIVVRKQGKKYQIVAGERRYQAAKVLKWNTITAIETSASEDRCFEMALAENEKRKSLNPW
HHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCHHHCCCCHH
EVGRAIQFLRKEKRKTAEEVSKVLGFTERYVKQLSSIARLDQKSVQDLIRSGKDPSVKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EALLKQKEGRGGEMISSRKSVPTKMTIQLVGLTLQQREKFLKELSSLKKKYGIKN
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKRSDFAGMDLLTAFGEKESSSSEIQVSDIVPNPSQPRVFGKEEVSDLVESMKRLGLIE
CCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIVVRKQGKKYQIVAGERRYQAAKVLKWNTITAIETSASEDRCFEMALAENEKRKSLNPW
HHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCHHHCCCCHH
EVGRAIQFLRKEKRKTAEEVSKVLGFTERYVKQLSSIARLDQKSVQDLIRSGKDPSVKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EALLKQKEGRGGEMISSRKSVPTKMTIQLVGLTLQQREKFLKELSSLKKKYGIKN
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 1552862; 9384377; 1900505; 8071208 [H]