Click here to switch to the map view.

The map label for this gene is rsgA [H]

Identifier: 116329491

GI number: 116329491

Start: 3526719

End: 3527675

Strand: Direct

Name: rsgA [H]

Synonym: LBL_2964

Alternate gene names: 116329491

Gene position: 3526719-3527675 (Clockwise)

Preceding gene: 116329485

Following gene: 116329492

Centisome position: 97.57

GC content: 40.23

Gene sequence:

>957_bases
ATGTTAGAGTCGGATCCTTCAGTCAAAGAGTTTTTTATCATTTCCCGCGTTTACGGAGCCTACTATGAAATTTATTCTCC
TGAAAGAGGGGTTGTAAGAGCATTTCTTCGTGGAAGATTGAGAACTGTTTCCGCTGAAGAAAGACATCCGTTCGTTGTCG
GAGATCAAATTCTCGCGGAGCCTTCGGTTGGTAAAGATTGGGTGATTTGTGAAAGATTGGAAAGAAAATCGTTCTTAACT
CGTAAGAGTCGAGAAGGTGATACTCAGGTTTTATGCGCTAACGCGGATCAGACGGCGGTTCTTATTTCTTTAAAGTCTCC
AGAGACCAAGGATGGTTTTTTGGATCGATGTTTGGCGGCGGTTTTTGCCTCAGGTACGCAGCCTTTGATTTTATTTACAA
AGTTGGATCTTATTTCCGAAGACGAGGCAGAAAGTCGTATGAAAATCTATCGGAATTTAGGATATCCTGTACTTGGAATT
TCCTGCACAACCGGTCAAGGAATCTCCGAATTACAGAAATATCTGCGGAGAAAAATGACATTTCTAGTCGGAAATTCAGG
AGTTGGTAAGTCTACTTTGATCAATCTATTGACTCGGACTCAGATCCAAAAAACTTCCGGCATCAGCGTTTCCAAAGATA
AGGGAAAACATACGACTACAAATTCCCTTTTGCTTGTTTTGGAAGATGGAACTACTTTGATCGATTCTCCGGGAATAAAA
GAATGGGGAATTCTCCATTTAAAAAAAGAGGAAATTCTGGAAAGTTTTCCCGAACTCTCCAGTCAAAAAAAGCATTGTGA
AGAATCAAATTGTTGTAAACTATCTTCCGGTTGTGCAATGTTATTCGCTTTGGAAACCGAATCGATGACATTGGAAAGAA
GGAAAAGTTTAGAGTCGATGCTTGCAAGTCTTGGTAATCCACATAGGGTTACACGGAGAGATAGAATTTCAAAATGA

Upstream 100 bases:

>100_bases
CACGGAGATAAACTGAAAACAGACTATCAAGAGAATTAAATATACGATTGGCCCTAAGGCGTTGAGTCTTCGGGTCGACA
TACGGCAGTGCGTAGAAATC

Downstream 100 bases:

>100_bases
AAGTAACTCACTCCTGTCTGGAATTCGATTCCATTGACGATCTTATAGATTTTACCAGGGAATTTGAAACCGGGTCCATG
ATTCGTTTTCTTTCTCCGGT

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLESDPSVKEFFIISRVYGAYYEIYSPERGVVRAFLRGRLRTVSAEERHPFVVGDQILAEPSVGKDWVICERLERKSFLT
RKSREGDTQVLCANADQTAVLISLKSPETKDGFLDRCLAAVFASGTQPLILFTKLDLISEDEAESRMKIYRNLGYPVLGI
SCTTGQGISELQKYLRRKMTFLVGNSGVGKSTLINLLTRTQIQKTSGISVSKDKGKHTTTNSLLLVLEDGTTLIDSPGIK
EWGILHLKKEEILESFPELSSQKKHCEESNCCKLSSGCAMLFALETESMTLERRKSLESMLASLGNPHRVTRRDRISK

Sequences:

>Translated_318_residues
MLESDPSVKEFFIISRVYGAYYEIYSPERGVVRAFLRGRLRTVSAEERHPFVVGDQILAEPSVGKDWVICERLERKSFLT
RKSREGDTQVLCANADQTAVLISLKSPETKDGFLDRCLAAVFASGTQPLILFTKLDLISEDEAESRMKIYRNLGYPVLGI
SCTTGQGISELQKYLRRKMTFLVGNSGVGKSTLINLLTRTQIQKTSGISVSKDKGKHTTTNSLLLVLEDGTTLIDSPGIK
EWGILHLKKEEILESFPELSSQKKHCEESNCCKLSSGCAMLFALETESMTLERRKSLESMLASLGNPHRVTRRDRISK
>Mature_318_residues
MLESDPSVKEFFIISRVYGAYYEIYSPERGVVRAFLRGRLRTVSAEERHPFVVGDQILAEPSVGKDWVICERLERKSFLT
RKSREGDTQVLCANADQTAVLISLKSPETKDGFLDRCLAAVFASGTQPLILFTKLDLISEDEAESRMKIYRNLGYPVLGI
SCTTGQGISELQKYLRRKMTFLVGNSGVGKSTLINLLTRTQIQKTSGISVSKDKGKHTTTNSLLLVLEDGTTLIDSPGIK
EWGILHLKKEEILESFPELSSQKKHCEESNCCKLSSGCAMLFALETESMTLERRKSLESMLASLGNPHRVTRRDRISK

Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover [H]

COG id: COG1162

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 engC GTPase domain [H]

Homologues:

Organism=Escherichia coli, GI87082381, Length=307, Percent_Identity=31.2703583061889, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010914
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004881 [H]

Pfam domain/function: PF03193 DUF258 [H]

EC number: NA

Molecular weight: Translated: 35591; Mature: 35591

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50936 ENGC_GTPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESDPSVKEFFIISRVYGAYYEIYSPERGVVRAFLRGRLRTVSAEERHPFVVGDQILAE
CCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCC
PSVGKDWVICERLERKSFLTRKSREGDTQVLCANADQTAVLISLKSPETKDGFLDRCLAA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
VFASGTQPLILFTKLDLISEDEAESRMKIYRNLGYPVLGISCTTGQGISELQKYLRRKMT
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
FLVGNSGVGKSTLINLLTRTQIQKTSGISVSKDKGKHTTTNSLLLVLEDGTTLIDSPGIK
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCEEECCCCCC
EWGILHLKKEEILESFPELSSQKKHCEESNCCKLSSGCAMLFALETESMTLERRKSLESM
CCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHH
LASLGNPHRVTRRDRISK
HHHCCCCCHHHHHHCCCC
>Mature Secondary Structure
MLESDPSVKEFFIISRVYGAYYEIYSPERGVVRAFLRGRLRTVSAEERHPFVVGDQILAE
CCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCC
PSVGKDWVICERLERKSFLTRKSREGDTQVLCANADQTAVLISLKSPETKDGFLDRCLAA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
VFASGTQPLILFTKLDLISEDEAESRMKIYRNLGYPVLGISCTTGQGISELQKYLRRKMT
HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
FLVGNSGVGKSTLINLLTRTQIQKTSGISVSKDKGKHTTTNSLLLVLEDGTTLIDSPGIK
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCEEECCCCCC
EWGILHLKKEEILESFPELSSQKKHCEESNCCKLSSGCAMLFALETESMTLERRKSLESM
CCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHH
LASLGNPHRVTRRDRISK
HHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA