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The map label for this gene is yxaF [H]

Identifier: 116329364

GI number: 116329364

Start: 3360060

End: 3360572

Strand: Direct

Name: yxaF [H]

Synonym: LBL_2820

Alternate gene names: 116329364

Gene position: 3360060-3360572 (Clockwise)

Preceding gene: 116329361

Following gene: 116329365

Centisome position: 92.96

GC content: 40.74

Gene sequence:

>513_bases
ATGGAACGACTCAGCTCCAGAGAACGATTGATACAGACCACAGCGCAACTTTTGCAAGAGAAAGGTTATTACGGAACCGG
ATTGAAGGACATTCTTAAATTAAGTGGAACTCCGAGCGGTTCGCTTTATCATTATTTTCCCGATGGAAAGGAAGAATTAA
CCGCAGCTGCAATTCGAAGCGCGGGAAGACGTCTCGAAAAACAAATCGAAACTACCATTGAAAATCATCCCGATCTTTAT
AGGGCTTTGCAAGAAATTACGAGTCGCCTTTCTCAGGAGTTAATCGACTCCGACTTCCAAAAAGGTTGTTCGAGCATATA
TCTCAAATGGCAAAATTTATTGAGCACTTTTCTGCAAAGATCGGAAATGAAAGAAGATCAGGTGAAACCCGTCTCGATTC
TTCTTTTGGCAGTGATAGAAGGGGCTTTGGTATTATGTCGTGCTAACCGTAGCATAGAACCCTTGGAAATTGTTAGCAAA
CAACTGGAAAATATTTTGAATATTCTAACTTAA

Upstream 100 bases:

>100_bases
ATTTTTCGACCTCGGATCCCATTTTTATCCTACGAATCTATTATAATTCATTCTCAACTCCCTTGACAGGAAAAACAACA
CGGTTTCATCCTGGGAAGAT

Downstream 100 bases:

>100_bases
GAGAATGTAATTGACCGCTTTTATTTTCCAATAAAATCAGTAGATCCATCCATTTCTAGGGAGCGAAGAATGAATCTTTT
TATCACAGGAGCTTCCGGCT

Product: AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MERLSSRERLIQTTAQLLQEKGYYGTGLKDILKLSGTPSGSLYHYFPDGKEELTAAAIRSAGRRLEKQIETTIENHPDLY
RALQEITSRLSQELIDSDFQKGCSSIYLKWQNLLSTFLQRSEMKEDQVKPVSILLLAVIEGALVLCRANRSIEPLEIVSK
QLENILNILT

Sequences:

>Translated_170_residues
MERLSSRERLIQTTAQLLQEKGYYGTGLKDILKLSGTPSGSLYHYFPDGKEELTAAAIRSAGRRLEKQIETTIENHPDLY
RALQEITSRLSQELIDSDFQKGCSSIYLKWQNLLSTFLQRSEMKEDQVKPVSILLLAVIEGALVLCRANRSIEPLEIVSK
QLENILNILT
>Mature_170_residues
MERLSSRERLIQTTAQLLQEKGYYGTGLKDILKLSGTPSGSLYHYFPDGKEELTAAAIRSAGRRLEKQIETTIENHPDLY
RALQEITSRLSQELIDSDFQKGCSSIYLKWQNLLSTFLQRSEMKEDQVKPVSILLLAVIEGALVLCRANRSIEPLEIVSK
QLENILNILT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19282; Mature: 19282

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLSSRERLIQTTAQLLQEKGYYGTGLKDILKLSGTPSGSLYHYFPDGKEELTAAAIRS
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
AGRRLEKQIETTIENHPDLYRALQEITSRLSQELIDSDFQKGCSSIYLKWQNLLSTFLQR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEMKEDQVKPVSILLLAVIEGALVLCRANRSIEPLEIVSKQLENILNILT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MERLSSRERLIQTTAQLLQEKGYYGTGLKDILKLSGTPSGSLYHYFPDGKEELTAAAIRS
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
AGRRLEKQIETTIENHPDLYRALQEITSRLSQELIDSDFQKGCSSIYLKWQNLLSTFLQR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEMKEDQVKPVSILLLAVIEGALVLCRANRSIEPLEIVSKQLENILNILT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]