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The map label for this gene is rpoE-1 [H]

Identifier: 116329138

GI number: 116329138

Start: 3040508

End: 3041050

Strand: Direct

Name: rpoE-1 [H]

Synonym: LBL_2561

Alternate gene names: 116329138

Gene position: 3040508-3041050 (Clockwise)

Preceding gene: 116329135

Following gene: 116329139

Centisome position: 84.12

GC content: 34.81

Gene sequence:

>543_bases
ATGAGCCAAAATTCCGAAAGTCAAATTTTTGATTTTGACGGTTTATATTCGAGAAATTATGAAAAAATCTATCGATTTCT
TCTTAGTAAAGGCGCTTCCAAAGAAGAAGCCGAAGAAACTTGTCAGGAAACTTTTATCAAAGTCCTGAACAACTGGGATA
AGTTCGATCCTTCCAAGGGCAACGAAACTTCTTGGATGTTTACGATCGCCAAAAACCAGTTTTTAGATTTGGTTCGGAAG
AAAGGCACATCCGAAAAGAGAGAAGTGGAAAATTCACATAAAGTTTTAGAATTCATTTCGAAAAAGGAAATAGAATACGA
GGAAGATAAACATCAGTTGGATCTTTTAAACGCAAGTCTGGAAAATTTACCTCATTTGGAAAAGAATATAATCATTCTGC
GTTTTTTAAGAAATTATACGATCAAAGAAACCGCCGAAAAGTTAGGGATATCCGCAAGAACGGTAAATCGGAAAACATAC
GTGTCGCTGATTTTCTTACGTAAGAAATTGCAAAATTCGAATTTCGACTTTGAGAGTATATAG

Upstream 100 bases:

>100_bases
AAGTTAAATGGTAAAAATTTTTGATCCGATGGCAGCATTCGATTTTTTTTTGCTTTTAGTGTGACACTTTTTTACAAGTC
AGTCCGTTATTTAATTACAG

Downstream 100 bases:

>100_bases
GAGATAAAAGATGGAACCTAACAGCGAACCAAATCGAAGGTCAAATATGCAACGAGCCATTGCGAACGAAATGACACGAT
CGGAACTCATCCAATTTTTA

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEETCQETFIKVLNNWDKFDPSKGNETSWMFTIAKNQFLDLVRK
KGTSEKREVENSHKVLEFISKKEIEYEEDKHQLDLLNASLENLPHLEKNIIILRFLRNYTIKETAEKLGISARTVNRKTY
VSLIFLRKKLQNSNFDFESI

Sequences:

>Translated_180_residues
MSQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEETCQETFIKVLNNWDKFDPSKGNETSWMFTIAKNQFLDLVRK
KGTSEKREVENSHKVLEFISKKEIEYEEDKHQLDLLNASLENLPHLEKNIIILRFLRNYTIKETAEKLGISARTVNRKTY
VSLIFLRKKLQNSNFDFESI
>Mature_179_residues
SQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEETCQETFIKVLNNWDKFDPSKGNETSWMFTIAKNQFLDLVRKK
GTSEKREVENSHKVLEFISKKEIEYEEDKHQLDLLNASLENLPHLEKNIIILRFLRNYTIKETAEKLGISARTVNRKTYV
SLIFLRKKLQNSNFDFESI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21305; Mature: 21174

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEETCQETFIKVLNNWDKFDPSKG
CCCCCCCCEECCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
NETSWMFTIAKNQFLDLVRKKGTSEKREVENSHKVLEFISKKEIEYEEDKHQLDLLNASL
CCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ENLPHLEKNIIILRFLRNYTIKETAEKLGISARTVNRKTYVSLIFLRKKLQNSNFDFESI
HHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEETCQETFIKVLNNWDKFDPSKG
CCCCCCCEECCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
NETSWMFTIAKNQFLDLVRKKGTSEKREVENSHKVLEFISKKEIEYEEDKHQLDLLNASL
CCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ENLPHLEKNIIILRFLRNYTIKETAEKLGISARTVNRKTYVSLIFLRKKLQNSNFDFESI
HHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]