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The map label for this gene is yebC [C]

Identifier: 116329114

GI number: 116329114

Start: 3004232

End: 3004981

Strand: Reverse

Name: yebC [C]

Synonym: LBL_2537

Alternate gene names: 116329114

Gene position: 3004981-3004232 (Counterclockwise)

Preceding gene: 116329116

Following gene: 116329113

Centisome position: 83.14

GC content: 45.2

Gene sequence:

>750_bases
ATGTCCGGACATTCCAAATGGGCAACGATTAAACGTAAGAAAGACGCGATCGATTCCAAGCGCGGAGCCATTTTTACAAG
AGTCGGGAAAGAAATCACGGTAGCGGCAAAAATGGGAGGAGGGGATCCGGAAGGAAATCCTAGACTCAGACTTGCAATAT
TGAAAGCCAAATCGGTAAACATGCCCAAGGATAATATAGAGAGGGCGATCAAAAAAGGGACCGGAGAGCTGGAAGGAGTC
GTTTACGAAGAATGTCTTTATGAATGTTTCGGGCCGGCTGGAATTGCAATTATGGTTTCTGCGGTGACCGACAAAAAGTC
TAGAACAACTCCGGAGATTAAAAGTATTCTTACAAAACTAGGAGGTTCGCTTGCGACTTCCGGTTCCGTAAGTAGGCTTT
TTGAAAAGAAAGGAGTGATCGTTTTGGAATCTTCTCAAATCGGAGAAGATAAATTGGTGGACCTTGCGGTAGGCGAAGGA
GCGGAAGACGTAATTAACGAGGGAGAAGTTTATCGAGTTATCACTACCCCGGACGATTACGAATCTGTATTACACGCGCT
AAACGAAAAAGGGCTGAAATCGGAAGAATCGGAAATCCGTTATATCGCTCTTATCAGCTCCGAAATCGCGGACAAAGAGG
TCGCGAAAAAAGTAATGAAGTTGATCGAGCAACTTGATGGGCACGACGACGTCACTTCCGTAACGTCCAACTTCGAATTA
GCCGCTTCACTCGAAAAAGAATTTGAGTGA

Upstream 100 bases:

>100_bases
ATGGACAGAATGTCTTTTTTTTGATTTTTGGAAAGTATCATCCAGGATCAACTCAAGCTTGATTCGATTATCAAAAGCAA
TTCATAGGGGATAGTAAATC

Downstream 100 bases:

>100_bases
TTCTCCGAAAATCCCCGGTGCCGTTTCCTCTTTGAAAGATAAGGAAGAAGCGGGTTCTTCTTGCTTATCTTTTTTCAAAT
TCGTTCGGGAATTTTTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGV
VYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLAVGEG
AEDVINEGEVYRVITTPDDYESVLHALNEKGLKSEESEIRYIALISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSNFEL
AASLEKEFE

Sequences:

>Translated_249_residues
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGV
VYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLAVGEG
AEDVINEGEVYRVITTPDDYESVLHALNEKGLKSEESEIRYIALISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSNFEL
AASLEKEFE
>Mature_248_residues
SGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVV
YEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLAVGEGA
EDVINEGEVYRVITTPDDYESVLHALNEKGLKSEESEIRYIALISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSNFELA
ASLEKEFE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=30.241935483871, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1788171, Length=243, Percent_Identity=42.798353909465, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=32.1888412017167, Blast_Score=104, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=25.4098360655738, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=33.4600760456274, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583305, Length=184, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2537_LEPBL (Q04YE4)

Other databases:

- EMBL:   CP000348
- RefSeq:   YP_798834.1
- ProteinModelPortal:   Q04YE4
- SMR:   Q04YE4
- STRING:   Q04YE4
- GeneID:   4407960
- GenomeReviews:   CP000348_GR
- KEGG:   lbl:LBL_2537
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   LBOR355276:LBL_2537-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27003; Mature: 26872

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVN
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCC
MPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHH
GGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLAVGEGAEDVINEGEVYRVITTPDDY
CCCCCCCCHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCHHHHHCCCCEEEEEECCCHH
ESVLHALNEKGLKSEESEIRYIALISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSNFEL
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHH
AASLEKEFE
HHHHHHHCC
>Mature Secondary Structure 
SGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVN
CCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCC
MPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHH
GGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLAVGEGAEDVINEGEVYRVITTPDDY
CCCCCCCCHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCHHHHHCCCCEEEEEECCCHH
ESVLHALNEKGLKSEESEIRYIALISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSNFEL
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHH
AASLEKEFE
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA