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The map label for this gene is sigW [H]

Identifier: 116329036

GI number: 116329036

Start: 2890973

End: 2891482

Strand: Direct

Name: sigW [H]

Synonym: LBL_2441

Alternate gene names: 116329036

Gene position: 2890973-2891482 (Clockwise)

Preceding gene: 116329035

Following gene: 116329037

Centisome position: 79.98

GC content: 39.61

Gene sequence:

>510_bases
ATGATGACTGAATCCGAATTTACGGAAATTGTAAGTTCCACTCGGGAAATTGTCCTCTCTGCGATAGAAAAAAATCTCGC
AGAGAGGTTTTCCTATGCCATCGACGACGTAGCTCAGGAAACTTATTTTCGAGTGTACAAAGCCCTCAAAAAGGATCAAT
TTCGCAAAGAATCAAAGCTGAGCACTTGGTTATATACGATCGCAAGAAACGAATCCCTAAGAATGAACGACAAACTTAGA
AAAGAGGAAGACTTCCTCATAAGCCATACGGACTTAAATGAAAATTCGAAACGATTGAACTCCCAGGAAATGATCGGAAC
GTTACGCGCACTCTTAGTTAAAATTCCGGATAAATATAGAAAGGTTCTCGAGTTTTATCTTGCGGGGTATTCCGAAAGTC
AAATCGCGGAGACAATGGGAGTAAAACCGGGAACCGTTAAATCGAGAGCATTTCGAGGAAAAGAAATGATAAAACGAGTC
GGAATCAAGGAGAAATTTTATGAAAAATAA

Upstream 100 bases:

>100_bases
ATGACGAAAAAAGCGATCGAGTTTCATACGATTCTCACTCCCGAACAAAGAAATAAACTAGTGGATTTGATTACAGAGTT
TCAACAAAAACATCGTCATC

Downstream 100 bases:

>100_bases
TCGTACTTTTTCCCTGAAAGAAGAAATCCGAAAAAGAAAAAAAGACGGGGATTGGGTGAGGGATATTTCTTCGAACGTAA
TTCGCAGAGATAAAAAAGAA

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MMTESEFTEIVSSTREIVLSAIEKNLAERFSYAIDDVAQETYFRVYKALKKDQFRKESKLSTWLYTIARNESLRMNDKLR
KEEDFLISHTDLNENSKRLNSQEMIGTLRALLVKIPDKYRKVLEFYLAGYSESQIAETMGVKPGTVKSRAFRGKEMIKRV
GIKEKFYEK

Sequences:

>Translated_169_residues
MMTESEFTEIVSSTREIVLSAIEKNLAERFSYAIDDVAQETYFRVYKALKKDQFRKESKLSTWLYTIARNESLRMNDKLR
KEEDFLISHTDLNENSKRLNSQEMIGTLRALLVKIPDKYRKVLEFYLAGYSESQIAETMGVKPGTVKSRAFRGKEMIKRV
GIKEKFYEK
>Mature_169_residues
MMTESEFTEIVSSTREIVLSAIEKNLAERFSYAIDDVAQETYFRVYKALKKDQFRKESKLSTWLYTIARNESLRMNDKLR
KEEDFLISHTDLNENSKRLNSQEMIGTLRALLVKIPDKYRKVLEFYLAGYSESQIAETMGVKPGTVKSRAFRGKEMIKRV
GIKEKFYEK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19845; Mature: 19845

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTESEFTEIVSSTREIVLSAIEKNLAERFSYAIDDVAQETYFRVYKALKKDQFRKESKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STWLYTIARNESLRMNDKLRKEEDFLISHTDLNENSKRLNSQEMIGTLRALLVKIPDKYR
HHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHH
KVLEFYLAGYSESQIAETMGVKPGTVKSRAFRGKEMIKRVGIKEKFYEK
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MMTESEFTEIVSSTREIVLSAIEKNLAERFSYAIDDVAQETYFRVYKALKKDQFRKESKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STWLYTIARNESLRMNDKLRKEEDFLISHTDLNENSKRLNSQEMIGTLRALLVKIPDKYR
HHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHH
KVLEFYLAGYSESQIAETMGVKPGTVKSRAFRGKEMIKRVGIKEKFYEK
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]