Click here to switch to the map view.

The map label for this gene is ynaI [C]

Identifier: 116328966

GI number: 116328966

Start: 2807936

End: 2808964

Strand: Direct

Name: ynaI [C]

Synonym: LBL_2367

Alternate gene names: 116328966

Gene position: 2807936-2808964 (Clockwise)

Preceding gene: 116328964

Following gene: 116328967

Centisome position: 77.69

GC content: 40.04

Gene sequence:

>1029_bases
ATGGACTGGAATGAAATTCAAACCTGGATCTCCAAAGATTTCATCTTAGAATTAGGAAGAGCAGTCGGGATTTTTCTTTT
CGTATTATTATTCGGTTATATACTCGGGGACAGAATCGTTCCGAAACTCTCCGAGCTTTTCTTTCAAAATAAACTTCAAC
ATTCGCATCCTCTCTATAAAGCGGGCAGAAGAAGCGTCCGTTTATTATTTTTTCTATTCGGAACCTTTTTGTTTTTAAAG
TTTCTAAAACTCCCCTCAGGTTCCGAAGAATTCGTATTATTAAGTTACCGAATTCTTTCAATCATCCTTTTGACTTTTTC
TTTCGTTCATCTGTTTTCAACGGGGCTCAAAGCCTATTCCGAAAAAACGGAAGGACTCATTTCTTCCGCTTCGATTATCA
ACAACGTAATTCGGATCGTTTTATTTGCCGTAGGAGTTTTATTGATACTTCAATCTCTTGGTATCCCGATCGCGCCGATC
CTGGGAGCACTCGGAGTCGGAGGACTTGCAGTTGCTCTCGGTTTACAACCGACCTTTTCAAATTTATTTTCGGGCTTAAA
CATTTTATTCGGAAAACAACTTAAGAAAGGGGATTATGTACGCTTACAAGGAGAAGGAATGGAAGGTCATGTACAGGATA
TTACCTGGAGAAGTACAAAAATCCGCAGATTCAATAACAGTACGATCGTAGTTCCAAACTCTGTCATGGCCTCTTCCGTG
TTCACGCACTTCGACCTACCCACCAAAGAACTTTCGATTCAGATCGAAGCCGGTGTCGCTTATCAAACAGACTTGGAAAA
AGTGGAATCTATGGCTGTCGATATCGGAAATGAAGTCTTAAAAAAATTCTACGGGTCTTCTTCGACCAAAGAGGTTTCCT
TCTCTTACCAAAAGTTCGACAAAAATTCGGTCAACTTCAAAATCGATCTTCCCTATCACGAGTTTACGGATCAATTTCCG
ATCCAGCACGAATTCATTAAACTTCTGTATTCCCGTTTTCAAAAAGAAGGAATCGAACTTCGCCTTTAG

Upstream 100 bases:

>100_bases
AGCCGACACGATTCGGACTTAAAATCCTGAAAGCTTAGATCGAAATGAAACCGAACGATTTAATCTTGCGCGATTTTAAT
TTAGATAAAAACTGTTCTCT

Downstream 100 bases:

>100_bases
AACAAAAGTAAAAATGAACTTCAAAAGAATATTCTACTATTGGAATGTTTTAAGTATCGACATCATCTGCGGCGCGATGG
CTTCCGCTTGGTTCGCTTCT

Product: mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDWNEIQTWISKDFILELGRAVGIFLFVLLFGYILGDRIVPKLSELFFQNKLQHSHPLYKAGRRSVRLLFFLFGTFLFLK
FLKLPSGSEEFVLLSYRILSIILLTFSFVHLFSTGLKAYSEKTEGLISSASIINNVIRIVLFAVGVLLILQSLGIPIAPI
LGALGVGGLAVALGLQPTFSNLFSGLNILFGKQLKKGDYVRLQGEGMEGHVQDITWRSTKIRRFNNSTIVVPNSVMASSV
FTHFDLPTKELSIQIEAGVAYQTDLEKVESMAVDIGNEVLKKFYGSSSTKEVSFSYQKFDKNSVNFKIDLPYHEFTDQFP
IQHEFIKLLYSRFQKEGIELRL

Sequences:

>Translated_342_residues
MDWNEIQTWISKDFILELGRAVGIFLFVLLFGYILGDRIVPKLSELFFQNKLQHSHPLYKAGRRSVRLLFFLFGTFLFLK
FLKLPSGSEEFVLLSYRILSIILLTFSFVHLFSTGLKAYSEKTEGLISSASIINNVIRIVLFAVGVLLILQSLGIPIAPI
LGALGVGGLAVALGLQPTFSNLFSGLNILFGKQLKKGDYVRLQGEGMEGHVQDITWRSTKIRRFNNSTIVVPNSVMASSV
FTHFDLPTKELSIQIEAGVAYQTDLEKVESMAVDIGNEVLKKFYGSSSTKEVSFSYQKFDKNSVNFKIDLPYHEFTDQFP
IQHEFIKLLYSRFQKEGIELRL
>Mature_342_residues
MDWNEIQTWISKDFILELGRAVGIFLFVLLFGYILGDRIVPKLSELFFQNKLQHSHPLYKAGRRSVRLLFFLFGTFLFLK
FLKLPSGSEEFVLLSYRILSIILLTFSFVHLFSTGLKAYSEKTEGLISSASIINNVIRIVLFAVGVLLILQSLGIPIAPI
LGALGVGGLAVALGLQPTFSNLFSGLNILFGKQLKKGDYVRLQGEGMEGHVQDITWRSTKIRRFNNSTIVVPNSVMASSV
FTHFDLPTKELSIQIEAGVAYQTDLEKVESMAVDIGNEVLKKFYGSSSTKEVSFSYQKFDKNSVNFKIDLPYHEFTDQFP
IQHEFIKLLYSRFQKEGIELRL

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=183, Percent_Identity=31.6939890710383, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786670, Length=149, Percent_Identity=30.8724832214765, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789291, Length=263, Percent_Identity=23.9543726235741, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 38688; Mature: 38688

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWNEIQTWISKDFILELGRAVGIFLFVLLFGYILGDRIVPKLSELFFQNKLQHSHPLYK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHH
AGRRSVRLLFFLFGTFLFLKFLKLPSGSEEFVLLSYRILSIILLTFSFVHLFSTGLKAYS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKTEGLISSASIINNVIRIVLFAVGVLLILQSLGIPIAPILGALGVGGLAVALGLQPTFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCHHHH
NLFSGLNILFGKQLKKGDYVRLQGEGMEGHVQDITWRSTKIRRFNNSTIVVPNSVMASSV
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHEEECCHHHEEECCCEEEECCHHHHHHH
FTHFDLPTKELSIQIEAGVAYQTDLEKVESMAVDIGNEVLKKFYGSSSTKEVSFSYQKFD
HHHCCCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCC
KNSVNFKIDLPYHEFTDQFPIQHEFIKLLYSRFQKEGIELRL
CCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDWNEIQTWISKDFILELGRAVGIFLFVLLFGYILGDRIVPKLSELFFQNKLQHSHPLYK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHH
AGRRSVRLLFFLFGTFLFLKFLKLPSGSEEFVLLSYRILSIILLTFSFVHLFSTGLKAYS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKTEGLISSASIINNVIRIVLFAVGVLLILQSLGIPIAPILGALGVGGLAVALGLQPTFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCHHHH
NLFSGLNILFGKQLKKGDYVRLQGEGMEGHVQDITWRSTKIRRFNNSTIVVPNSVMASSV
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHEEECCHHHEEECCCEEEECCHHHHHHH
FTHFDLPTKELSIQIEAGVAYQTDLEKVESMAVDIGNEVLKKFYGSSSTKEVSFSYQKFD
HHHCCCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCC
KNSVNFKIDLPYHEFTDQFPIQHEFIKLLYSRFQKEGIELRL
CCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]