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The map label for this gene is nifU [C]

Identifier: 116328954

GI number: 116328954

Start: 2791148

End: 2791939

Strand: Direct

Name: nifU [C]

Synonym: LBL_2353

Alternate gene names: 116328954

Gene position: 2791148-2791939 (Clockwise)

Preceding gene: 116328953

Following gene: 116328955

Centisome position: 77.22

GC content: 45.96

Gene sequence:

>792_bases
ATGAGTGTAATGGACTTTGCACGGTACAAACAAATCAACGATGATAGACTTAATTATCGAGAAATGGAAGACGCGACCGT
AGTCTCTAATTACAGGAACGTAGGTTGTGGAGACGGGTACCGCATTTATCTCAAAATAGATTCCTCCGAAAAAGTCACCG
ATGCAAGTTATACCACAACCGGTTGTGGTTTTGGAATCGTCGCGCTTGCGATGGCTACCGAATTTGCCAAAGGCAAAACT
GTCCAAGAATTGAAAGACGTAACTCCGGCCGACATTGAAAAGATGTTCGAGTTTCCGGAACGTAGAAAGAATTACCCGGA
ATCCGCAGTGGCCGCTCTTTTACAAGCGGTAAAAGACTATGAAAGCGGGGAAGGCGTGCCCAAGGAAAAAAGAATCACCG
CCGGGAAAGCTTTGGAAATTCTGAAAGAAAAAGGCTCCCTCAGAGGGGAAGATCTTTCCAGCATCATATTAGAAAAACTT
AAATTTGATGGAGTGGATTTCAGCGGAGCCAATCTCGGACACGCGTTCCTTCAAAATTCCTCCTTTGTGGGCGCAAACTT
TTCAGCCGCCAAACTCAGAGGCTCCTTTTTAAACAATGCCGATCTTAGAAACGCGAATTTCAGAGGAGCCGACCTTCGCT
GGGCAAAACTCGCGGGCGCGAACGTGGAAGGAGCGGATTTTACAGATGCGATCTACGACATCGGAACGCGCCTAGATCAA
AAACAAATCCACCTGTTTAGCGTGATGAAAAAAGAAGGAAAGGATCTTTACCTGAACAAAGAAGCGGAATGA

Upstream 100 bases:

>100_bases
CCGGTCGAGTAGACAAGTTCAAGAAAAAATATAAGATGCAGTGAGTTTCCGAACTCTTCCTCTTTTTTATGCCGTCTAAA
AACCGGGCAGGAGAATTCCG

Downstream 100 bases:

>100_bases
AGTTAGACGACAAAGTTAAAATTATTAAAATTCCTAGCTATATTTCAGAAAAATCTTCGCGCAACGATCCCACTGACTTT
ATTTTTTCAAAAGAACTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: RDD Domain-Containing Protein

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSVMDFARYKQINDDRLNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSEKVTDASYTTTGCGFGIVALAMATEFAKGKT
VQELKDVTPADIEKMFEFPERRKNYPESAVAALLQAVKDYESGEGVPKEKRITAGKALEILKEKGSLRGEDLSSIILEKL
KFDGVDFSGANLGHAFLQNSSFVGANFSAAKLRGSFLNNADLRNANFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
KQIHLFSVMKKEGKDLYLNKEAE

Sequences:

>Translated_263_residues
MSVMDFARYKQINDDRLNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSEKVTDASYTTTGCGFGIVALAMATEFAKGKT
VQELKDVTPADIEKMFEFPERRKNYPESAVAALLQAVKDYESGEGVPKEKRITAGKALEILKEKGSLRGEDLSSIILEKL
KFDGVDFSGANLGHAFLQNSSFVGANFSAAKLRGSFLNNADLRNANFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
KQIHLFSVMKKEGKDLYLNKEAE
>Mature_262_residues
SVMDFARYKQINDDRLNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSEKVTDASYTTTGCGFGIVALAMATEFAKGKTV
QELKDVTPADIEKMFEFPERRKNYPESAVAALLQAVKDYESGEGVPKEKRITAGKALEILKEKGSLRGEDLSSIILEKLK
FDGVDFSGANLGHAFLQNSSFVGANFSAAKLRGSFLNNADLRNANFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQK
QIHLFSVMKKEGKDLYLNKEAE

Specific function: May Be Involved In The Formation Or Repair Of [Fe-S] Clusters Present In Iron-Sulfur Proteins (Potential). [C]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29136; Mature: 29005

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVMDFARYKQINDDRLNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSEKVTDASYTTT
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
GCGFGIVALAMATEFAKGKTVQELKDVTPADIEKMFEFPERRKNYPESAVAALLQAVKDY
CCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHH
ESGEGVPKEKRITAGKALEILKEKGSLRGEDLSSIILEKLKFDGVDFSGANLGHAFLQNS
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
SFVGANFSAAKLRGSFLNNADLRNANFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHHHHHCCCCH
KQIHLFSVMKKEGKDLYLNKEAE
HHHHHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure 
SVMDFARYKQINDDRLNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSEKVTDASYTTT
CCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
GCGFGIVALAMATEFAKGKTVQELKDVTPADIEKMFEFPERRKNYPESAVAALLQAVKDY
CCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHH
ESGEGVPKEKRITAGKALEILKEKGSLRGEDLSSIILEKLKFDGVDFSGANLGHAFLQNS
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
SFVGANFSAAKLRGSFLNNADLRNANFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHHHHHCCCCH
KQIHLFSVMKKEGKDLYLNKEAE
HHHHHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA