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The map label for this gene is ycaJ [C]

Identifier: 116328835

GI number: 116328835

Start: 2607947

End: 2609218

Strand: Reverse

Name: ycaJ [C]

Synonym: LBL_2214

Alternate gene names: 116328835

Gene position: 2609218-2607947 (Counterclockwise)

Preceding gene: 116328836

Following gene: 116328834

Centisome position: 72.19

GC content: 46.23

Gene sequence:

>1272_bases
TTGAGCGATCTTTTCACAAAAAAACCGATTCCGCCTCTCGCTCATAAGATCCGTCCTTCCGGATTTGAGGAAGTGATCGG
GCAGACAAGGGCCACAAAACAACTCGTCAATTATCGTTCGCCGGTTTCCATCATACTCTACGGACCTCCGGGCACCGGAA
AATCTACGTTAGCCGGAATTCTTTGCAGAAAGTGGAATCTTCCTTTTGTGGAATACAACGCAGTTTCCACCGGAGTCTCC
GAAATCAAAAAATTGCTGGAACGCGCGGAAAGAGAAGGAACAATTCTTCTATTTTTGGATGAAATTCATCGTTTCAGCGC
TTCTCAACAGGACAGTCTTTTGAAAGGAGTGGAAACCGGTCATCTTGTTCTCATCGGAGCCACGACCGAAAATCCGGCGT
TTCGGATCACAAGACCTCTTTTATCCAGATGTCAGATTCTGAAAATCGAACCTTTGAGTTGGGAGGAGCAGTCTTTACTT
CTCGAAAGAGGAATTCAAAATTTAGAATATTCCATTCATCTAAATCCGGGCGCAAAGGAAACGCTCATTCGATTTTCCGG
CGGGGACGGAAGAAAACTCCTATCGAACTTGGAGGGGCTTAGCTTCAGTTTTCCGGAGAATCATACGATTTCCAAATCCG
ACGTGGAAGAATATTTGGAAAGCCGTGTGATCGAATACGATAAAAGCGGAGAATCTCATTACGACGTAATTTCCGCGTTT
ATTAAATCGGTACGGGGAAGCGATCCAGACGCTGCGCTTTATTATCTCGCAGTTCTGCTGGAAGGAGGAGAAGATCCTCT
TTTTATTATGAGAAGGTTGATCATTCTTGCAAGTGAGGACGTAGGAAACGCCTCCGTCAACGGTTTGCCTCTTGCCGTTT
CGGGTTTACACGCTCTCGAAGCGATTGGAATGCCGGAAGGAAGGTTGGTCCTCGCGCATGTGACTACGTTTCTTGCTTCT
TGTCCGAAATCGAATGCGAGTTACAAAGGGATCGGAGCTGCGCTTTCTTTCGTAAGAGAAAAGGGGACCGGAATTAAAAT
TCCCAATCGTCTGCGCAACGCTCCGACCTTTCTTCATAAGAAGGAAGGCGCTTCTCAAGGTTACTTATATCCTCACGATT
TCGGAGGATTTAAGGAACAAAATTATTTCCCGGATGAGTTCGCGGAAAATCCGCCGCGTTTTTACTTTCCTACGGGTAAC
GGAGCGGAGCTGAAACTCAAGGAATATCTAGATAGGGTTTGGGAAAAATTTTCCAGCCGCGACGATCCTTAG

Upstream 100 bases:

>100_bases
AATCTTTGGTTTGTTGTCATAGCGCTTGCGACGTCTGCAATGCGACCATACGAACCTGTCTCGGAAAAATCAAGAACGAG
TTGGGAGTGAGCGAACTCAC

Downstream 100 bases:

>100_bases
AGGCGTGGCGAGATTTCAGTTTCTTTTGTGACAGGTTGATTATTTGTCGTAGAGTTCCGGACGAACTCTTACCTGTTTAA
CCTTCGATTCTGAACGTTTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSDLFTKKPIPPLAHKIRPSGFEEVIGQTRATKQLVNYRSPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVS
EIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQSLL
LERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALEAIGMPEGRLVLAHVTTFLAS
CPKSNASYKGIGAALSFVREKGTGIKIPNRLRNAPTFLHKKEGASQGYLYPHDFGGFKEQNYFPDEFAENPPRFYFPTGN
GAELKLKEYLDRVWEKFSSRDDP

Sequences:

>Translated_423_residues
MSDLFTKKPIPPLAHKIRPSGFEEVIGQTRATKQLVNYRSPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVS
EIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQSLL
LERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALEAIGMPEGRLVLAHVTTFLAS
CPKSNASYKGIGAALSFVREKGTGIKIPNRLRNAPTFLHKKEGASQGYLYPHDFGGFKEQNYFPDEFAENPPRFYFPTGN
GAELKLKEYLDRVWEKFSSRDDP
>Mature_422_residues
SDLFTKKPIPPLAHKIRPSGFEEVIGQTRATKQLVNYRSPVSIILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVSE
IKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQSLLL
ERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAFI
KSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALEAIGMPEGRLVLAHVTTFLASC
PKSNASYKGIGAALSFVREKGTGIKIPNRLRNAPTFLHKKEGASQGYLYPHDFGGFKEQNYFPDEFAENPPRFYFPTGNG
AELKLKEYLDRVWEKFSSRDDP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=430, Percent_Identity=36.9767441860465, Blast_Score=258, Evalue=1e-68,
Organism=Homo sapiens, GI18426904, Length=430, Percent_Identity=33.4883720930233, Blast_Score=213, Evalue=3e-55,
Organism=Escherichia coli, GI1787119, Length=451, Percent_Identity=36.1419068736142, Blast_Score=264, Evalue=9e-72,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=36.2997658079625, Blast_Score=254, Evalue=2e-68,
Organism=Saccharomyces cerevisiae, GI6324039, Length=262, Percent_Identity=27.4809160305344, Blast_Score=73, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 46986; Mature: 46855

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50052 GUANYLATE_KINASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFTKKPIPPLAHKIRPSGFEEVIGQTRATKQLVNYRSPVSIILYGPPGTGKSTLAGI
CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
LCRKWNLPFVEYNAVSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETG
HHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHCCCCC
HLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQSLLLERGIQNLEYSIHLNPGAKE
CEEEEEECCCCCCEEECHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCE
TLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
EEEEECCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALE
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
AIGMPEGRLVLAHVTTFLASCPKSNASYKGIGAALSFVREKGTGIKIPNRLRNAPTFLHK
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHCC
KEGASQGYLYPHDFGGFKEQNYFPDEFAENPPRFYFPTGNGAELKLKEYLDRVWEKFSSR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCC
DDP
CCC
>Mature Secondary Structure 
SDLFTKKPIPPLAHKIRPSGFEEVIGQTRATKQLVNYRSPVSIILYGPPGTGKSTLAGI
CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
LCRKWNLPFVEYNAVSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETG
HHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHCCCCC
HLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQSLLLERGIQNLEYSIHLNPGAKE
CEEEEEECCCCCCEEECHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCE
TLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAF
EEEEECCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIILASEDVGNASVNGLPLAVSGLHALE
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
AIGMPEGRLVLAHVTTFLASCPKSNASYKGIGAALSFVREKGTGIKIPNRLRNAPTFLHK
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHCC
KEGASQGYLYPHDFGGFKEQNYFPDEFAENPPRFYFPTGNGAELKLKEYLDRVWEKFSSR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCC
DDP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]