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The map label for this gene is rbfA

Identifier: 116328712

GI number: 116328712

Start: 2443924

End: 2444277

Strand: Reverse

Name: rbfA

Synonym: LBL_2086

Alternate gene names: 116328712

Gene position: 2444277-2443924 (Counterclockwise)

Preceding gene: 116328713

Following gene: 116328711

Centisome position: 67.63

GC content: 45.48

Gene sequence:

>354_bases
TTGAATCCGATCCGAAGAAGAAAAATCGAAGCGGAAGCCGTTCGTACCGTTGCGATGATGATTCTGTCGGGCAAAGTAAA
AGATCCAAGGGTGCATATGGTTTCCGTCCATCGTGCGGAAATATCTGAAGACGGGAAGAACATGAAAGTATTCGTAACCG
CGATCTGCACGGACAAAAAAAAGTTGAAAGTACTATCCGGACTCAACAGCGCCGCCGGTTTGTTTCAAACGACGTTATCC
GGAAAGTTAGGACTTAGAATTACGCCTAGAATGCAATTTCTCTGGGATGAGGAATATATTCAGAGTTTGGATGAATCGCT
CAGACTTACCAGAAAACCCACGAGTGCGGACTGA

Upstream 100 bases:

>100_bases
GATCCAAGTGGACGGATACAACGACTTTAAAGTCGGAGATACGATTGAAGCTTATAATGTAACTGTGATTAAGCGGAAAT
TGGAATAGGAAAACCGGGCT

Downstream 100 bases:

>100_bases
ATCCGGATTTTTGCTCATTCACAAACCGGAAGGGATGACTTCTTCGGATCTTGTAGTGACTGTCCGTAAAAAACTTAAAT
TCAAAAAGGTCGGTCATACG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKLKVLSGLNSAAGLFQTTLS
GKLGLRITPRMQFLWDEEYIQSLDESLRLTRKPTSAD

Sequences:

>Translated_117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKLKVLSGLNSAAGLFQTTLS
GKLGLRITPRMQFLWDEEYIQSLDESLRLTRKPTSAD
>Mature_117_residues
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKKKLKVLSGLNSAAGLFQTTLS
GKLGLRITPRMQFLWDEEYIQSLDESLRLTRKPTSAD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_LEPBJ (Q04U30)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_800348.1
- ProteinModelPortal:   Q04U30
- STRING:   Q04U30
- GeneID:   4409843
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_0947
- eggNOG:   COG0858
- HOGENOM:   HBG530885
- OMA:   HFLWDEE
- ProtClustDB:   CLSK573715
- BioCyc:   LBOR355277:LBJ_0947-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13201; Mature: 13201

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHCCCCCCEEEEEEEEECCCH
KLKVLSGLNSAAGLFQTTLSGKLGLRITPRMQFLWDEEYIQSLDESLRLTRKPTSAD
HHHHHHCCCHHHHHHHHHCCCCCCEEECCCHHEEECHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNPIRRRKIEAEAVRTVAMMILSGKVKDPRVHMVSVHRAEISEDGKNMKVFVTAICTDKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHCCCCCCEEEEEEEEECCCH
KLKVLSGLNSAAGLFQTTLSGKLGLRITPRMQFLWDEEYIQSLDESLRLTRKPTSAD
HHHHHHCCCHHHHHHHHHCCCCCCEEECCCHHEEECHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA