Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 116328682

GI number: 116328682

Start: 2405310

End: 2405978

Strand: Reverse

Name: yggS [C]

Synonym: LBL_2053

Alternate gene names: 116328682

Gene position: 2405978-2405310 (Counterclockwise)

Preceding gene: 116328683

Following gene: 116328681

Centisome position: 66.57

GC content: 41.55

Gene sequence:

>669_bases
ATGGGGATCCGAGAGCATTATCAAAAAATTTACGCGGAACTTCAAAAACTCAGGCCGGAAAATCCTCCCACACTCATAGC
CGTTTCCAAGTTTCAGTCGTTGGAAAAAGTAAAAGAAGCGGTTAACGCTGGAATTCTTCACTTCGGTGAAAATAGAATTC
AGGAAGGAATCGAAAAATTCTCGGAGTGGCTCCGAAATAAAGATACTTCTTTAATTTTACATCATATCGGGCCTGTCCAG
AGCGGAACCTTAAGAAAATTATTCTTGGGATATTCCTATGCGCATGGAGTTGGGGCTATGGGAATTGTGAACGAACTTCT
AAATCGCGCGAAAAAGGAACAAAAAAACATCCGATATTTTCTCCAAGCCAACCTAACCGGAGAGGACACAAAACACGGTG
TCGAAAGAAAAGAACTGATCGGAATTTTGAAACAAAAAGAAAATTTGTCTAATGCGTATTGCAAGTTAGAAGGACTCATG
GTGATGGGTCCATCGGATGGGGATCCGACTAAAACCAAAGAAGTATTTCGGGAGCTATCCAAAATTAGAAAGGATTATAT
ACCTGAGGCGAAACTTTCCATGGGCATGTCGGGGGATTATAAAATTGCGATCGAAGAGGGAAGCGATTTCGTCAGAATCG
GGAGCGCAATTTTTGGGGAAAGGAATTAA

Upstream 100 bases:

>100_bases
CGGAGAAAACACAAACCTCATGGGACTGATCGAAAAAGCCTCGAAAAAAGGGTTTGGAAGTTGGAAAAGGAAATGGAAAA
ATTAAAATCCAAAAAGTGAT

Downstream 100 bases:

>100_bases
GATGAAACAGACAATTGGAATCGCAGGTTGCGGAAACATGGGTGGAGCGATTTACATTTCTCTTAAGAAACGTTATCCGA
CACAGATTTTTGGGTATGAT

Product: PLP dependent enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MGIREHYQKIYAELQKLRPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKFSEWLRNKDTSLILHHIGPVQ
SGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYFLQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLM
VMGPSDGDPTKTKEVFRELSKIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN

Sequences:

>Translated_222_residues
MGIREHYQKIYAELQKLRPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKFSEWLRNKDTSLILHHIGPVQ
SGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYFLQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLM
VMGPSDGDPTKTKEVFRELSKIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
>Mature_221_residues
GIREHYQKIYAELQKLRPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKFSEWLRNKDTSLILHHIGPVQS
GTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYFLQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLMV
MGPSDGDPTKTKEVFRELSKIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=241, Percent_Identity=33.6099585062241, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1789321, Length=205, Percent_Identity=33.1707317073171, Blast_Score=107, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=32.4074074074074, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25109; Mature: 24978

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIREHYQKIYAELQKLRPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKF
CCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SEWLRNKDTSLILHHIGPVQSGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYF
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEE
LQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLMVMGPSDGDPTKTKEVFRELS
EEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHEEECEEEECCCCCCCHHHHHHHHHHH
KIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
HHHHHCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GIREHYQKIYAELQKLRPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKF
CHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SEWLRNKDTSLILHHIGPVQSGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYF
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEE
LQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLMVMGPSDGDPTKTKEVFRELS
EEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHEEECEEEECCCCCCCHHHHHHHHHHH
KIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
HHHHHCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]