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The map label for this gene is cph2 [H]

Identifier: 116328680

GI number: 116328680

Start: 2402336

End: 2403394

Strand: Reverse

Name: cph2 [H]

Synonym: LBL_2050

Alternate gene names: 116328680

Gene position: 2403394-2402336 (Counterclockwise)

Preceding gene: 116328681

Following gene: 116328679

Centisome position: 66.49

GC content: 41.74

Gene sequence:

>1059_bases
TTGATCAGTAAAGAAAACGATCCCCTGATGATAGAATATCTGGAAAAGAAAATCTATGATCAAAAACAATTATTAGAAAT
CAGCAAAGCTCTAAATTCAACCTTAGATTATAAATATCTAATGGATGCGATCTTAAACATCTGTCTCGCTCAGCTTCAAA
CTCTGCGGGCGGCGATTTACGTCAGTCCGGAAGCAGATTCCGACTTTTTCGAGTTGGATCCAGGTTATAAAGGTTTCGAT
CTTTCCGAAAATGAAAAATCTTTCCGAATCAAAACGAGCGCAGCGCTCATCCAATTTCTCGAAACGAGAATGAAGGCAAT
GACCGTAAATCAAATCGAAGAGAGTATGGGAAGAGCTGTGAACGAAGTCGATTTCCTAAGAGGAATCGGAGCGGATCTTA
TCATTCCGTTGAACGCGAAAGGAAAAGTGAATGGACTTTTGGTTCTCGGAGAGAAAATGACGATGAGTGAGGTTCAGGAG
GAGGACAAAGATTTTTTAACGACTCTTTCTACTCTCGCCGGAATTGCAGTAGAGAATTCCAGACTCTACGAACTTGCCAC
CGTGGATATGATGACCGGACTCAAAGTACATCATTATTTTCAAACAAAACTCAAAGAAGAGATGGAACGTTGCAGAAAAA
AAAAGTCTCATCTTACTCTTTTATTCACGGACGTGGATAATTTTAAGAAATTCAACGATACTCACGGTCATCAAGCGGGA
GATCAGGTTTTGATCGAAGTGGCGAAACAATTGATACGTAAAGCGGGCAAATACGATATTCCTGCACGTTATGGAGGAGA
GGAATTTTGTCTGATAATGCCCGGGGCTGATCTTGAAAGGGGTTATGAAATGGGAGAGACGATCCGTAAAGCCGTGGAGG
CAAGTTCAGTCAAAAACCCAAACGGTGGGCCGGACTTGAAGGTTACTCTTTCTGTCGGCGTATCGGAGTTTTGGCCGAAG
GACAAAAACAATAGGGATCTGATCGAAAGATCGGACAAGGCTTTGTATATGGCCAAACATTCCGGTAAAAATCAAACCAT
TTGTTATAAAGAGGACTAG

Upstream 100 bases:

>100_bases
GTAAAAAGAAAATTACCTCGAATGAAAAAACGTCGAACAAAATTCGACGGTAAATTTGAAATCACTCCTTTAGTATCTAA
GAGACCGGAGAACCAATCTT

Downstream 100 bases:

>100_bases
AAAAACTTTTCTTTTTGAGAAATATGCCGATCTGAACAATATGGAAAAGAATCTCCTATTGTACAAAGTATCTCCGACTC
AGCTTGAGGAAAACGAACTC

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLRAAIYVSPEADSDFFELDPGYKGFD
LSENEKSFRIKTSAALIQFLETRMKAMTVNQIEESMGRAVNEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMSEVQE
EDKDFLTTLSTLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFKKFNDTHGHQAG
DQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIRKAVEASSVKNPNGGPDLKVTLSVGVSEFWPK
DKNNRDLIERSDKALYMAKHSGKNQTICYKED

Sequences:

>Translated_352_residues
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLRAAIYVSPEADSDFFELDPGYKGFD
LSENEKSFRIKTSAALIQFLETRMKAMTVNQIEESMGRAVNEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMSEVQE
EDKDFLTTLSTLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFKKFNDTHGHQAG
DQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIRKAVEASSVKNPNGGPDLKVTLSVGVSEFWPK
DKNNRDLIERSDKALYMAKHSGKNQTICYKED
>Mature_352_residues
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLRAAIYVSPEADSDFFELDPGYKGFD
LSENEKSFRIKTSAALIQFLETRMKAMTVNQIEESMGRAVNEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMSEVQE
EDKDFLTTLSTLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFKKFNDTHGHQAG
DQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIRKAVEASSVKNPNGGPDLKVTLSVGVSEFWPK
DKNNRDLIERSDKALYMAKHSGKNQTICYKED

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=33.5227272727273, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=33.7423312883436, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=33.1288343558282, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=34.3195266272189, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=137, Percent_Identity=35.7664233576642, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=30.1675977653631, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=139, Percent_Identity=33.0935251798561, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=31.1377245508982, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=27.9503105590062, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=26.9005847953216, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39867; Mature: 39867

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLRAAIY
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
VSPEADSDFFELDPGYKGFDLSENEKSFRIKTSAALIQFLETRMKAMTVNQIEESMGRAV
ECCCCCCCCEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMSEVQEEDKDFLTTLSTLAGIAVENS
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
RLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFKKFNDTHGHQAG
CEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCHH
DQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIRKAVEASSVKNP
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
NGGPDLKVTLSVGVSEFWPKDKNNRDLIERSDKALYMAKHSGKNQTICYKED
CCCCCEEEEEECCHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLRAAIY
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
VSPEADSDFFELDPGYKGFDLSENEKSFRIKTSAALIQFLETRMKAMTVNQIEESMGRAV
ECCCCCCCCEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMSEVQEEDKDFLTTLSTLAGIAVENS
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
RLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFKKFNDTHGHQAG
CEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCHH
DQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIRKAVEASSVKNP
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
NGGPDLKVTLSVGVSEFWPKDKNNRDLIERSDKALYMAKHSGKNQTICYKED
CCCCCEEEEEECCHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]