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The map label for this gene is yddU [C]

Identifier: 116328665

GI number: 116328665

Start: 2373372

End: 2374586

Strand: Reverse

Name: yddU [C]

Synonym: LBL_2032

Alternate gene names: 116328665

Gene position: 2374586-2373372 (Counterclockwise)

Preceding gene: 116328666

Following gene: 116328664

Centisome position: 65.7

GC content: 41.65

Gene sequence:

>1215_bases
ATGAATCAGCCTAAATTACCCAATCTACTGATTCTAGACGATGAGGAAGAAATTGCAGGTATCCTCGGGGATATAGCTAA
ACAATGTGGTTTCGAAGTTATGGTCACTCACGAAGCCGGGGTATTTTTCGAAAAGTTGACCGAGGACACTCAATATATCA
TTTTAGATTTAATGATTCCAGGAGTGGACGGAGTCGACGTTTTACGGATGTTATCCGGTAAAAAACTTTCCGTTTCCGTA
ATCTTAATCAGTGGAGCGGATCGGAGGGTTTTACAAAGCGCCGAAGCCCTTGCAATCCAATACGGATTAAAAATTTCGGG
AGTTCTTGAAAAACCGATCCGAATCCAAGAATATCAGAATGTACTTATGGGGCTTATCTCCAATCAAAAGAACGAATCTT
CGCAATCTTTTGTCGTCAGAAAAAGAACCGTTAAAGAGCAAACTTCCGTGAATACACCGGAGGAAATCGAGCAGGCGATT
CGAGAGGATCAATTTTTACTTTATTATCAACCGAAGATCGATTTTAAAACGGGAAACGTTTCCGGTTTTGAATCTCTGGT
GCGTTGGTTTCATCCGGAAAGAGGTTTGATTTTTCCGGATTCTTTTATTCCGATCTTGGAATCGTATCCGAGTTTAATGG
ACGCGATGACTGAGAAATTGATTCTTCAGGCGCTCTCTCAGTGTTCGGTTTGGAACAAACAATTCCCGGGTATTGCGGTT
GCTGTAAATGTTTCTCCTGTGAGTATGAACAAGTTGATTCTTCCTGAAACTATTTCCAAGATGATCGAAAGTTTCGGATT
GAAGAACAGTCAGTTGATCGTCGAAGTTACGGAAACTCAGCTATTGGAAAATATCACGTCTACCTTAGACATTTTAACTC
GGATTCGAATTCGAGGAATCGGACTTTCCGTGGACGATTTCGGAATCGGTTATTCTTCCTTGAAACAGATTCATCGTTAT
CCTTTTACGGAACTCAAAATCGATCGATCTTTTGTAAGTGTGGCTCCATATGATAAGGAAGCTCTTTTTATTTGTCAGGC
CGCGATTGATCTCGGTCATAAACTTGGAATGACGGTCGTGGCGGAAGGGATCGAAACTGCTGTTGTGGGAGAGTTGATGA
AAAAACACGGTTGTGACAAAGGACAGGGCTATTTTTACAGTAAACCTATGCCTGCGGACGCTACCTTACCGTTTTTGTCC
AGTTTCAAGTTCTAA

Upstream 100 bases:

>100_bases
TCGGTCGACGCAAACGATTCGGAAAGTTCAGCGGGGATCTCTTGGCCCGTATCTAGAAAGTCTCTTGAAAGTCGTTTTAA
TATATTTTAATTGAATACTC

Downstream 100 bases:

>100_bases
TTTTTTTCTGGTTTACTCTCAAGGAGAGAATTCGATTCTTTCGGTACTATGAAAAATGTTCTTCAGGATCCGGATTTTCC
CGTTTTGATCCGGGCTTATC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNQPKLPNLLILDDEEEIAGILGDIAKQCGFEVMVTHEAGVFFEKLTEDTQYIILDLMIPGVDGVDVLRMLSGKKLSVSV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIQEYQNVLMGLISNQKNESSQSFVVRKRTVKEQTSVNTPEEIEQAI
REDQFLLYYQPKIDFKTGNVSGFESLVRWFHPERGLIFPDSFIPILESYPSLMDAMTEKLILQALSQCSVWNKQFPGIAV
AVNVSPVSMNKLILPETISKMIESFGLKNSQLIVEVTETQLLENITSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAVVGELMKKHGCDKGQGYFYSKPMPADATLPFLS
SFKF

Sequences:

>Translated_404_residues
MNQPKLPNLLILDDEEEIAGILGDIAKQCGFEVMVTHEAGVFFEKLTEDTQYIILDLMIPGVDGVDVLRMLSGKKLSVSV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIQEYQNVLMGLISNQKNESSQSFVVRKRTVKEQTSVNTPEEIEQAI
REDQFLLYYQPKIDFKTGNVSGFESLVRWFHPERGLIFPDSFIPILESYPSLMDAMTEKLILQALSQCSVWNKQFPGIAV
AVNVSPVSMNKLILPETISKMIESFGLKNSQLIVEVTETQLLENITSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAVVGELMKKHGCDKGQGYFYSKPMPADATLPFLS
SFKF
>Mature_404_residues
MNQPKLPNLLILDDEEEIAGILGDIAKQCGFEVMVTHEAGVFFEKLTEDTQYIILDLMIPGVDGVDVLRMLSGKKLSVSV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIQEYQNVLMGLISNQKNESSQSFVVRKRTVKEQTSVNTPEEIEQAI
REDQFLLYYQPKIDFKTGNVSGFESLVRWFHPERGLIFPDSFIPILESYPSLMDAMTEKLILQALSQCSVWNKQFPGIAV
AVNVSPVSMNKLILPETISKMIESFGLKNSQLIVEVTETQLLENITSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAVVGELMKKHGCDKGQGYFYSKPMPADATLPFLS
SFKF

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=247, Percent_Identity=37.246963562753, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1787541, Length=329, Percent_Identity=30.6990881458967, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=31.1203319502075, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=32.0987654320988, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081743, Length=251, Percent_Identity=31.4741035856574, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=29.5275590551181, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=32.3770491803279, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=31.9066147859922, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=31.25, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI226510982, Length=273, Percent_Identity=25.6410256410256, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788849, Length=277, Percent_Identity=27.7978339350181, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87082096, Length=262, Percent_Identity=26.3358778625954, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 45112; Mature: 45112

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPKLPNLLILDDEEEIAGILGDIAKQCGFEVMVTHEAGVFFEKLTEDTQYIILDLMIP
CCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCEEEEEEEEEC
GVDGVDVLRMLSGKKLSVSVILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIQEYQN
CCCHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCEEECHHCCCCHHHHHHH
VLMGLISNQKNESSQSFVVRKRTVKEQTSVNTPEEIEQAIREDQFLLYYQPKIDFKTGNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCEEEEECCCC
SGFESLVRWFHPERGLIFPDSFIPILESYPSLMDAMTEKLILQALSQCSVWNKQFPGIAV
HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
AVNVSPVSMNKLILPETISKMIESFGLKNSQLIVEVTETQLLENITSTLDILTRIRIRGI
EEEECCCCCCCEECHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHEEE
GLSVDDFGIGYSSLKQIHRYPFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVV
CCCCCCCCCCHHHHHHHHHCCCHHEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHH
AEGIETAVVGELMKKHGCDKGQGYFYSKPMPADATLPFLSSFKF
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MNQPKLPNLLILDDEEEIAGILGDIAKQCGFEVMVTHEAGVFFEKLTEDTQYIILDLMIP
CCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCEEEEEEEEEC
GVDGVDVLRMLSGKKLSVSVILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIQEYQN
CCCHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCEEECHHCCCCHHHHHHH
VLMGLISNQKNESSQSFVVRKRTVKEQTSVNTPEEIEQAIREDQFLLYYQPKIDFKTGNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCEEEEECCCC
SGFESLVRWFHPERGLIFPDSFIPILESYPSLMDAMTEKLILQALSQCSVWNKQFPGIAV
HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
AVNVSPVSMNKLILPETISKMIESFGLKNSQLIVEVTETQLLENITSTLDILTRIRIRGI
EEEECCCCCCCEECHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHEEE
GLSVDDFGIGYSSLKQIHRYPFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVV
CCCCCCCCCCHHHHHHHHHCCCHHEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHH
AEGIETAVVGELMKKHGCDKGQGYFYSKPMPADATLPFLSSFKF
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]