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The map label for this gene is hfq [H]

Identifier: 116328564

GI number: 116328564

Start: 2241776

End: 2242024

Strand: Reverse

Name: hfq [H]

Synonym: LBL_1921

Alternate gene names: 116328564

Gene position: 2242024-2241776 (Counterclockwise)

Preceding gene: 116328565

Following gene: 116328563

Centisome position: 62.03

GC content: 37.75

Gene sequence:

>249_bases
ATGTCTGCTAAAAACAATATACAGGACCAACTCTTAAACACTGCCCGAAAGGATAAATTGGATCTTACGATTTATCTTCT
AAATGGAGTTCCTTTGAAAGGTAAGGTGGTAAGTTTCGATAATTTTACGATTGTGCTTGAACAGGAAAATAAACAAAGTC
TCGTTTATAAACACGCGATCTCCACGATTATTCCCGCTAAGATCATCAAGCTCTATACCGAGGAAACGAAAGACGCAGTG
CAAGGATAA

Upstream 100 bases:

>100_bases
GCAGGTCACTTGGTTTCGTAAGGAACCATACGTTCAACCGATGGGACGGTCCGAGGCGTTGGAACGAATCAAACATATGA
AGTAACGGAAACAAAAAAAG

Downstream 100 bases:

>100_bases
TGCGATTTTGGATTAAGTTATTCTGGATTCTCATTTCGGGATTCTTTGCAGCTCTTCTTTATCTTTGTGTCCATCCTCTC
AAAGAGGGAGAGTCTCTTCT

Product: host factor I related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MSAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAISTIIPAKIIKLYTEETKDAV
QG

Sequences:

>Translated_82_residues
MSAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAISTIIPAKIIKLYTEETKDAV
QG
>Mature_81_residues
SAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAISTIIPAKIIKLYTEETKDAVQ
G

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=73, Percent_Identity=39.7260273972603, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9233; Mature: 9102

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAI
CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHH
STIIPAKIIKLYTEETKDAVQG
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAI
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHH
STIIPAKIIKLYTEETKDAVQG
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA