Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 116328555

GI number: 116328555

Start: 2232124

End: 2233599

Strand: Reverse

Name: pdtaR [H]

Synonym: LBL_1912

Alternate gene names: 116328555

Gene position: 2233599-2232124 (Counterclockwise)

Preceding gene: 116328559

Following gene: 116328553

Centisome position: 61.8

GC content: 41.8

Gene sequence:

>1476_bases
ATGAACTCATCCGACATCAATCCTTCTTTTACTTCCATCTTGATCGTAGACGACGAATGGCTGATCGCTTTTAATCTTCA
AGTTACCCTTCAAAAGTTAGGGTATCAGGTTGCCGGAATTGCAAGAACGGCGGAAGAGGCGTTGGAATTTGCGGAACGGA
CAAAACCGGATTTGATCCTCATGGATATTCGGATTGAGGGAGAACTGGATGGAATTCAAGCTGCGGAAAAAATCCAAAGT
AAAATGGATGTTCCCGTAATCTTTATGACCGCATTTGCGGATGAGGAAACTTTCAATCGTGCCGTAAGTAAAGCATCCTT
GTTCGGGTATATCTCAAAACCGTTTCAGCCCGCTTCCCTGAAGAATTCGATCGAGATTGCACTCAAACAGCAAAGGAGGT
TTGGAAAGGCGCAGGAAGAAGGAAAGGAATTTAAGGACGTTATTCAAAATATCGGAGAGAGCGCAATTTCTCTGGATCGG
GAAGGAAAAATTTTATTTATGAACCATATTGCGGAGTATCTCACGGGTTGGATTCTTTCCGAAGTTCAGGGAAAAGATGG
AGAGAGGGTCCTAAGGCTTTCTACGGACAACGGCGAAAACATTCGAACTCGAATCGGAAGTGTCAACTCCGATCAGCTGA
AATATATCCCGTCTTTGCTAACTCGTAAAGACGGAAGCCGCATTCAAGTTGCGTTCCGTGTTTCCCCTGTCAGAGATGAA
GATGGAAATGTCGTAGGTTCCATCATTATGCTTTCCGAACTGATTTCCCTTTCGGTATCCGAAAAAGAGAAATCAGAAAT
GGAAAAGGTGATTCAATCCGAAAGAAGATTGGATTCGATTCAAAAACTTGCGGCCGGCCTTGCGCACGAGATCAACAATC
CTTTGATGGGGATCATCAATTACGGACATATCATTCGAAATCACAAAGGAGGGGACGCCGACACGAAAAATTACGCGCGT
CTCATTATAGAACAGGGAGAAAGAATCGCATCCATCATCCGTAATCTGATCCTGTTTTCCAAAAAAGATCCGGAACAACC
GATACGAACCAACATAAAACAACTTATAGGTTCCGTGGAAGATATGATCTCTGAAATGTTGAAGTCGCAAGAAATTCGAT
TGGAGAAACAAATTCCGGAAGACTTGGAAGTTTTCATCCGTCCGAATCAAATCCGAGAAGTTCTTTATAACATTCTTTAT
TATTATTCTGAAAATCAAAAGGAAACTTTGATTCACTTAAAGGCAGTTTTGGATTATGGAGATACTTCTTATCTGAAAAT
TTTGATTTCAGGGAAATTGAACCTAAATCTAAACGAAGAAAGTAGATTTGAACCCTTTGAAAATTTTCGCTCAAACGACG
CTCGGATCGGAATGGGTCTTTCGGTTTGTTACGGAATTCTACAAGCCAACCGAGGGCAACTTCTCCTCAAAAAATCGGAT
TCAGGCTGGGATTTTATCATTCAAATCCCCGTTTAA

Upstream 100 bases:

>100_bases
TGAATTCAAACTTCGTTCAGGATGGAATTATCGGATTGAGATTGAAAAAAAATTTCGATGTGAGTAGGATATACTTTTTT
CCAAGGTTGCACAGCGAAGA

Downstream 100 bases:

>100_bases
AGTAAGACAAAATGGCGCCCCTTCTGGGCTTGAAAAACGTGGGTTAGATGCGAGCATTTACCACAAAACAAAAAAACCAA
CAGAAGGAACGCAATGAAAA

Product: two-component regulator complex reciever subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MNSSDINPSFTSILIVDDEWLIAFNLQVTLQKLGYQVAGIARTAEEALEFAERTKPDLILMDIRIEGELDGIQAAEKIQS
KMDVPVIFMTAFADEETFNRAVSKASLFGYISKPFQPASLKNSIEIALKQQRRFGKAQEEGKEFKDVIQNIGESAISLDR
EGKILFMNHIAEYLTGWILSEVQGKDGERVLRLSTDNGENIRTRIGSVNSDQLKYIPSLLTRKDGSRIQVAFRVSPVRDE
DGNVVGSIIMLSELISLSVSEKEKSEMEKVIQSERRLDSIQKLAAGLAHEINNPLMGIINYGHIIRNHKGGDADTKNYAR
LIIEQGERIASIIRNLILFSKKDPEQPIRTNIKQLIGSVEDMISEMLKSQEIRLEKQIPEDLEVFIRPNQIREVLYNILY
YYSENQKETLIHLKAVLDYGDTSYLKILISGKLNLNLNEESRFEPFENFRSNDARIGMGLSVCYGILQANRGQLLLKKSD
SGWDFIIQIPV

Sequences:

>Translated_491_residues
MNSSDINPSFTSILIVDDEWLIAFNLQVTLQKLGYQVAGIARTAEEALEFAERTKPDLILMDIRIEGELDGIQAAEKIQS
KMDVPVIFMTAFADEETFNRAVSKASLFGYISKPFQPASLKNSIEIALKQQRRFGKAQEEGKEFKDVIQNIGESAISLDR
EGKILFMNHIAEYLTGWILSEVQGKDGERVLRLSTDNGENIRTRIGSVNSDQLKYIPSLLTRKDGSRIQVAFRVSPVRDE
DGNVVGSIIMLSELISLSVSEKEKSEMEKVIQSERRLDSIQKLAAGLAHEINNPLMGIINYGHIIRNHKGGDADTKNYAR
LIIEQGERIASIIRNLILFSKKDPEQPIRTNIKQLIGSVEDMISEMLKSQEIRLEKQIPEDLEVFIRPNQIREVLYNILY
YYSENQKETLIHLKAVLDYGDTSYLKILISGKLNLNLNEESRFEPFENFRSNDARIGMGLSVCYGILQANRGQLLLKKSD
SGWDFIIQIPV
>Mature_491_residues
MNSSDINPSFTSILIVDDEWLIAFNLQVTLQKLGYQVAGIARTAEEALEFAERTKPDLILMDIRIEGELDGIQAAEKIQS
KMDVPVIFMTAFADEETFNRAVSKASLFGYISKPFQPASLKNSIEIALKQQRRFGKAQEEGKEFKDVIQNIGESAISLDR
EGKILFMNHIAEYLTGWILSEVQGKDGERVLRLSTDNGENIRTRIGSVNSDQLKYIPSLLTRKDGSRIQVAFRVSPVRDE
DGNVVGSIIMLSELISLSVSEKEKSEMEKVIQSERRLDSIQKLAAGLAHEINNPLMGIINYGHIIRNHKGGDADTKNYAR
LIIEQGERIASIIRNLILFSKKDPEQPIRTNIKQLIGSVEDMISEMLKSQEIRLEKQIPEDLEVFIRPNQIREVLYNILY
YYSENQKETLIHLKAVLDYGDTSYLKILISGKLNLNLNEESRFEPFENFRSNDARIGMGLSVCYGILQANRGQLLLKKSD
SGWDFIIQIPV

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=381, Percent_Identity=21.5223097112861, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: 2.7.3.- [C]

Molecular weight: Translated: 55618; Mature: 55618

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSDINPSFTSILIVDDEWLIAFNLQVTLQKLGYQVAGIARTAEEALEFAERTKPDLIL
CCCCCCCCCEEEEEEEECCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEE
MDIRIEGELDGIQAAEKIQSKMDVPVIFMTAFADEETFNRAVSKASLFGYISKPFQPASL
EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
KNSIEIALKQQRRFGKAQEEGKEFKDVIQNIGESAISLDREGKILFMNHIAEYLTGWILS
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEHHHHHHHHHHHHHH
EVQGKDGERVLRLSTDNGENIRTRIGSVNSDQLKYIPSLLTRKDGSRIQVAFRVSPVRDE
HHCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
DGNVVGSIIMLSELISLSVSEKEKSEMEKVIQSERRLDSIQKLAAGLAHEINNPLMGIIN
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YGHIIRNHKGGDADTKNYARLIIEQGERIASIIRNLILFSKKDPEQPIRTNIKQLIGSVE
HHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
DMISEMLKSQEIRLEKQIPEDLEVFIRPNQIREVLYNILYYYSENQKETLIHLKAVLDYG
HHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DTSYLKILISGKLNLNLNEESRFEPFENFRSNDARIGMGLSVCYGILQANRGQLLLKKSD
CCEEEEEEEECCEEEEECCCCCCCCHHHHCCCCCEECCHHHHHHHHHHCCCCCEEEEECC
SGWDFIIQIPV
CCCEEEEEECC
>Mature Secondary Structure
MNSSDINPSFTSILIVDDEWLIAFNLQVTLQKLGYQVAGIARTAEEALEFAERTKPDLIL
CCCCCCCCCEEEEEEEECCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEE
MDIRIEGELDGIQAAEKIQSKMDVPVIFMTAFADEETFNRAVSKASLFGYISKPFQPASL
EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
KNSIEIALKQQRRFGKAQEEGKEFKDVIQNIGESAISLDREGKILFMNHIAEYLTGWILS
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEHHHHHHHHHHHHHH
EVQGKDGERVLRLSTDNGENIRTRIGSVNSDQLKYIPSLLTRKDGSRIQVAFRVSPVRDE
HHCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
DGNVVGSIIMLSELISLSVSEKEKSEMEKVIQSERRLDSIQKLAAGLAHEINNPLMGIIN
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YGHIIRNHKGGDADTKNYARLIIEQGERIASIIRNLILFSKKDPEQPIRTNIKQLIGSVE
HHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
DMISEMLKSQEIRLEKQIPEDLEVFIRPNQIREVLYNILYYYSENQKETLIHLKAVLDYG
HHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DTSYLKILISGKLNLNLNEESRFEPFENFRSNDARIGMGLSVCYGILQANRGQLLLKKSD
CCEEEEEEEECCEEEEECCCCCCCCHHHHCCCCCEECCHHHHHHHHHHCCCCCEEEEECC
SGWDFIIQIPV
CCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]