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The map label for this gene is tnhA [H]

Identifier: 116328451

GI number: 116328451

Start: 2087305

End: 2088405

Strand: Reverse

Name: tnhA [H]

Synonym: LBL_1794

Alternate gene names: 116328451

Gene position: 2088405-2087305 (Counterclockwise)

Preceding gene: 116328456

Following gene: 116328450

Centisome position: 57.78

GC content: 38.87

Gene sequence:

>1101_bases
ATGAAAAGAAAAGTATATGTAGGAATGGATGTCCACAAAGAAACGATCCAAATCGCGTATTTAACGAGCAATTCAAAGGA
AATATTGAAAGAACAACAGATAAAACACAATGAAGTTCAAATCAAAAAGTTCATCAAAAAACTCAAAACAGAATGGAACG
AGATATATTGTTGTTACGAGGCAGGAGTAACCGGTTATCCACTTTACAGATATCTAAAGTCATTGGGAGTGAACTGTATC
CTTGTAGCGCCTGGAAAGATTCCAAGACAAAATACCGATAAGATCAAAACGGATAAAAGAGACGCGATCAAATTAGCGAG
ATTAATGCGAAGTGGAGAATTGGAATCGATTCATGTTCCCAGTGAAGAGGACGCAGCAGTAAGAGATTATTTAAGATCCC
GTGACAGTCTTCGTTTGGATTTAGGAAGGAATCGTCAAAGGTTGATGAAATTCTTATTAAGAAAAGACATAAAGTATTCC
ACAACGAAGTATTGGACGGTGAGTCATTACAAATGGTTGAACAATCTTCACTTTAACAACGAAATCCTTCAAGAGACGTT
TAACGATTATTATAGTCGAGTGAGAGTTCAAGAAGAGAATTTAAAAGCGATGGATAAAAAGATACAAGAGATAGCGGAAA
GTGAACCGTATCGAGAGAAAGTGGGAATCTTAAGATGCTTTCGAGGAGTGGACTATTTAACGGCAATGTTCTTACTTTGT
GAGGTAAACGACTTCAAGCGATTCAAAACGGCCGGTTCGTTCATGAGTTTTCTTGGACTTGTTCCTGGAGAATATTCCAG
CGGTTCCAAAAGAAAACAAACAGGGATTACTAAAACTGGAAGTCCCAGACTTAGAAGGATTTTGACGGAAGCGGCTTGGC
AACATCGCTTCCCTGGAACAGGAAGTAAAATCATAACCGCACGTAGATCGGGACAACCTGCATTAGTCGTTGCTTTATCG
GAAAAAGCTTCTCTCAGGTTACACAAGAAATTTCGCAATCTACAGAGGAAAAACTCCTCAAGTGATGATAACGGCAGTTT
CAAGAGAGTTATCCGGATTTCTTTGGGCGGCAATGAATCTTGTAGCCTAAAGTTAGAGTAA

Upstream 100 bases:

>100_bases
TTTTTGGACTTAGACAAAATGGCGCCCCTTCTGGGCTTGAAAAACGTGGGTTATATGCGAGCATTTACCACAAAACAAGA
AAACCAACAGAAGGAACGCA

Downstream 100 bases:

>100_bases
TGTTCATCCAATAATTGAATTCGTTAGAGAAGATGTACGATAAAGGAGGAATACTTGTTGGCGAGAGTGTTGAAGCAAAT
TTGAATTTCAAATTTGACCT

Product: transposase IS1533

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDAAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALS
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE

Sequences:

>Translated_366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDAAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALS
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE
>Mature_366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDAAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALS
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42512; Mature: 42512

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEE
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDAAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALSEKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNES
CCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
CSLKLE
EEEEEC
>Mature Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEE
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDAAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALSEKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNES
CCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
CSLKLE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8171119 [H]