| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is rpoN [H]
Identifier: 116328333
GI number: 116328333
Start: 1949387
End: 1950808
Strand: Reverse
Name: rpoN [H]
Synonym: LBL_1670
Alternate gene names: 116328333
Gene position: 1950808-1949387 (Counterclockwise)
Preceding gene: 116328334
Following gene: 116328332
Centisome position: 53.97
GC content: 40.44
Gene sequence:
>1422_bases GTGAATCTTAGTCAGTCGCTGGTTCAAAAACAAACTCAAAAACTGGTGATGACCCAGGACTTAAGACAGTCCATAGAACT TTTACCCTTGTCCACTTTGGAACTTTCAGATCGAATCAACTCCGAACTTGTGGAAAATCCGATGCTTGAGGAAGAGTATG TTTCCGAAAGAAACAAAACTCCCGATCTCTATAGCCGAGACGACCTAAGAAGAAAAGAGAAGAACGACTTTCTCAAAAAT TCGGACGTGACCTGGCAGGATCATTTTTCCTTGGACAAAGCGGGTAGTTTTGGTTCGGATGCTTCCGATCGAAATCAGAA ATACATCGAGTCTTCTCCTGAAAGAAGTTCCTTGTCGGAACACCTTCTTTGGCAACTCAGGCTTTCTAGTTTAAAGCCGG AGGAAATTTCCATCGGAGAAATGTTAATTTCCATGCTTGATGATCACGGATTTATCACGATTCCGATCTCAAATCTCTGC AAAGAGATGAAACTGAACGAAAAAAAAGTGCGTAAAATCTTGGATCAGATTCAGAGATTGGATCCGATCGGAATCGGAAC TAAGAATGTCCAGGAAACTCTTCTTATCCAAGCACAGATCGTAAAACCGGAAGATCAAAAGCTTCATACTCTCATTCGAG ATCATATCAAAGATCTAGAAAAACTGGATTATAAGTCGATTTCCAAAAAGATGGAAATTTCTCTGGAAACTGTGGAGTCC CTCGCATCTGAAATCAAAAAATTGGAACCTTATCCCGCTACTCTTTACACTCCAAACAAACCGGATTACGTGATCCCTGA TGTGATCGTGAGAGAAGTGGAGGGGGAATTTGATATATACATCAACGATGAATGGATACCCCGCCTTAAGATAAATAAAG AATATAAGAATATTCTAAAGAACGCAAAAGAGTCGGATAAAGAATACATCACGTCTAAACTCGGTTCGGCCGAATGGCTC ATCCGTTCCGTAAATCAAAGAAGACAAACCTTGTTTAAGGTCACTTCCGCAATTATAGAAATGCAAACCGAGTTTTTTCA AAAAGGGATTCAATATATAAAACCTCTGACTCTCAAGGACATCGCCGAAAAATTGGAGATGCACGAGTCCACTATTTCCA GAATCACTTCCAACAAATACGTTCAAACTTCCAGAGGAATCATGGAATTAAAGTGGTTTTTTTCCTCCGGAGTCCGTTCT TCCGAAGGTGGGATCGAATCTTCTAAAAAAATTCACGATCTTATTCGAAATCTCGTCAAAGAGGAACAATCCGATCGTCC TTTGTCCGATCAGGAAATCGTGGAAGCGATCGGGAAACAAGGAATCGAAATCGCAAGAAGAACGGTTGCCAAGTACAGAA AGATCTTAAAAATTCTTCCTTCCAGCCAAAGAAAAAAAGTCAAATCTCTGGAGTCCAGATAA
Upstream 100 bases:
>100_bases ATATCATGTATAGCGGAAGAATTTTGATTTCCGGCTCCACTCACGATCTTGTAAACGATCCGGAGACGAGAAGAATCTAT TTGGGCGAGGATTTTACACT
Downstream 100 bases:
>100_bases TCCATGTCAATGCCAGGAATCAACGTTTCTAATCTTCTCAATGAACACGAAGAGTTAGGCTTACGTTTGCTCGCGGGAGA AAAAGGACTTACCAATCGAA
Product: DNA-directed RNA polymerase sigma-54 subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 473
Protein sequence:
>473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYVSERNKTPDLYSRDDLRRKEKNDFLKN SDVTWQDHFSLDKAGSFGSDASDRNQKYIESSPERSSLSEHLLWQLRLSSLKPEEISIGEMLISMLDDHGFITIPISNLC KEMKLNEKKVRKILDQIQRLDPIGIGTKNVQETLLIQAQIVKPEDQKLHTLIRDHIKDLEKLDYKSISKKMEISLETVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVEGEFDIYINDEWIPRLKINKEYKNILKNAKESDKEYITSKLGSAEWL IRSVNQRRQTLFKVTSAIIEMQTEFFQKGIQYIKPLTLKDIAEKLEMHESTISRITSNKYVQTSRGIMELKWFFSSGVRS SEGGIESSKKIHDLIRNLVKEEQSDRPLSDQEIVEAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR
Sequences:
>Translated_473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYVSERNKTPDLYSRDDLRRKEKNDFLKN SDVTWQDHFSLDKAGSFGSDASDRNQKYIESSPERSSLSEHLLWQLRLSSLKPEEISIGEMLISMLDDHGFITIPISNLC KEMKLNEKKVRKILDQIQRLDPIGIGTKNVQETLLIQAQIVKPEDQKLHTLIRDHIKDLEKLDYKSISKKMEISLETVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVEGEFDIYINDEWIPRLKINKEYKNILKNAKESDKEYITSKLGSAEWL IRSVNQRRQTLFKVTSAIIEMQTEFFQKGIQYIKPLTLKDIAEKLEMHESTISRITSNKYVQTSRGIMELKWFFSSGVRS SEGGIESSKKIHDLIRNLVKEEQSDRPLSDQEIVEAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR >Mature_473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYVSERNKTPDLYSRDDLRRKEKNDFLKN SDVTWQDHFSLDKAGSFGSDASDRNQKYIESSPERSSLSEHLLWQLRLSSLKPEEISIGEMLISMLDDHGFITIPISNLC KEMKLNEKKVRKILDQIQRLDPIGIGTKNVQETLLIQAQIVKPEDQKLHTLIRDHIKDLEKLDYKSISKKMEISLETVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVEGEFDIYINDEWIPRLKINKEYKNILKNAKESDKEYITSKLGSAEWL IRSVNQRRQTLFKVTSAIIEMQTEFFQKGIQYIKPLTLKDIAEKLEMHESTISRITSNKYVQTSRGIMELKWFFSSGVRS SEGGIESSKKIHDLIRNLVKEEQSDRPLSDQEIVEAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=478, Percent_Identity=35.3556485355649, Blast_Score=305, Evalue=5e-84,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 54885; Mature: 54885
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYVSERNKT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC PDLYSRDDLRRKEKNDFLKNSDVTWQDHFSLDKAGSFGSDASDRNQKYIESSPERSSLSE CCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHH HLLWQLRLSSLKPEEISIGEMLISMLDDHGFITIPISNLCKEMKLNEKKVRKILDQIQRL HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHC DPIGIGTKNVQETLLIQAQIVKPEDQKLHTLIRDHIKDLEKLDYKSISKKMEISLETVES CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVEGEFDIYINDEWIPRLKINKEYKNILK HHHHHHHCCCCCCEEECCCCCCEECHHHHHHHHCCCEEEEECCCCCCCCEECHHHHHHHH NAKESDKEYITSKLGSAEWLIRSVNQRRQTLFKVTSAIIEMQTEFFQKGIQYIKPLTLKD HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IAEKLEMHESTISRITSNKYVQTSRGIMELKWFFSSGVRSSEGGIESSKKIHDLIRNLVK HHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH EEQSDRPLSDQEIVEAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYVSERNKT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC PDLYSRDDLRRKEKNDFLKNSDVTWQDHFSLDKAGSFGSDASDRNQKYIESSPERSSLSE CCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHH HLLWQLRLSSLKPEEISIGEMLISMLDDHGFITIPISNLCKEMKLNEKKVRKILDQIQRL HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHC DPIGIGTKNVQETLLIQAQIVKPEDQKLHTLIRDHIKDLEKLDYKSISKKMEISLETVES CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVEGEFDIYINDEWIPRLKINKEYKNILK HHHHHHHCCCCCCEEECCCCCCEECHHHHHHHHCCCEEEEECCCCCCCCEECHHHHHHHH NAKESDKEYITSKLGSAEWLIRSVNQRRQTLFKVTSAIIEMQTEFFQKGIQYIKPLTLKD HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IAEKLEMHESTISRITSNKYVQTSRGIMELKWFFSSGVRSSEGGIESSKKIHDLIRNLVK HHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH EEQSDRPLSDQEIVEAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9421909 [H]