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The map label for this gene is rimM

Identifier: 116328321

GI number: 116328321

Start: 1938423

End: 1938953

Strand: Reverse

Name: rimM

Synonym: LBL_1658

Alternate gene names: 116328321

Gene position: 1938953-1938423 (Counterclockwise)

Preceding gene: 116328322

Following gene: 116328320

Centisome position: 53.64

GC content: 40.49

Gene sequence:

>531_bases
TTGACTGAAGGGTGGATTTCCCTCGGTCAATTGGGCAAACCCTTTGGAATCAAAGGATGGCTTCGTTTCAACGTTCGGGA
TTCCATTCTTACGAAGGTTAAACTTCCAGTTCGATTAAAACTGGGTAAATCCGATCCCAATTTCCCCGAAACAGAAATTA
TTCTCTTAGAAATCCGTCCACATAACGGAAAGTTTGTTGTTCGTTTTGAAGGAATCGCCACTCCCGAAGAAGCAGAAAAG
TGGGTTGGAGGAATTCTTTTTCTGCCTCAAAACCTTCTTCCGAAAATCGAAACTAAGGACGAATTTTATGTCAGAGATCT
TATAGGTTTACAAGCGATCGATGAATTCGGAAAGAGCCTAAATTGGAAACTGACGGATATACAAGATAATCCGGCACATC
CGATTCTTGTCTTTTCGAAATCAGAAGAGGAGGAAATTCTCATTCCTTTTTTGCATGTTTTTGTGGGGGAACTGAATCTG
GAAAAAAAGACGATCGTATTGATACAACCGGAGCTTTGGAATGAAGTTTAA

Upstream 100 bases:

>100_bases
GGAAAAGTCATTGGTAAAAACGGCCGTATTGCAAAGTCCCTGCGCGCGATTCTTACTGCAGCTTCCGTAAAAGCAGGAAA
AAACTTCTCTCTAGAGATCA

Downstream 100 bases:

>100_bases
TTTCATTACACTTTTTCCTGAAAAGATCCAATCTTATTTCTCGGAGGGACTGCAGCAAAAGGCGATTGAGTCCGGGATAT
TTTCTATAAACACGATCCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTEGWISLGQLGKPFGIKGWLRFNVRDSILTKVKLPVRLKLGKSDPNFPETEIILLEIRPHNGKFVVRFEGIATPEEAEK
WVGGILFLPQNLLPKIETKDEFYVRDLIGLQAIDEFGKSLNWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNL
EKKTIVLIQPELWNEV

Sequences:

>Translated_176_residues
MTEGWISLGQLGKPFGIKGWLRFNVRDSILTKVKLPVRLKLGKSDPNFPETEIILLEIRPHNGKFVVRFEGIATPEEAEK
WVGGILFLPQNLLPKIETKDEFYVRDLIGLQAIDEFGKSLNWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNL
EKKTIVLIQPELWNEV
>Mature_175_residues
TEGWISLGQLGKPFGIKGWLRFNVRDSILTKVKLPVRLKLGKSDPNFPETEIILLEIRPHNGKFVVRFEGIATPEEAEKW
VGGILFLPQNLLPKIETKDEFYVRDLIGLQAIDEFGKSLNWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNLE
KKTIVLIQPELWNEV

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_LEPBJ (Q04SW3)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_800765.1
- ProteinModelPortal:   Q04SW3
- SMR:   Q04SW3
- STRING:   Q04SW3
- GeneID:   4410047
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_1434
- eggNOG:   COG0806
- HOGENOM:   HBG527536
- OMA:   ENIREHN
- ProtClustDB:   PRK14590
- BioCyc:   LBOR355277:LBJ_1434-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20197; Mature: 20066

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEGWISLGQLGKPFGIKGWLRFNVRDSILTKVKLPVRLKLGKSDPNFPETEIILLEIRP
CCCCCEECCCCCCCCCCCEEEEEECCHHEEEEEECCEEEEECCCCCCCCCCEEEEEEEEC
HNGKFVVRFEGIATPEEAEKWVGGILFLPQNLLPKIETKDEFYVRDLIGLQAIDEFGKSL
CCCEEEEEECCCCCHHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
NWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNLEKKTIVLIQPELWNEV
CEEEEECCCCCCCEEEEEECCCCCEEEHHHHHHHHCCCCCCCEEEEEECHHHCCCC
>Mature Secondary Structure 
TEGWISLGQLGKPFGIKGWLRFNVRDSILTKVKLPVRLKLGKSDPNFPETEIILLEIRP
CCCCEECCCCCCCCCCCEEEEEECCHHEEEEEECCEEEEECCCCCCCCCCEEEEEEEEC
HNGKFVVRFEGIATPEEAEKWVGGILFLPQNLLPKIETKDEFYVRDLIGLQAIDEFGKSL
CCCEEEEEECCCCCHHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
NWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNLEKKTIVLIQPELWNEV
CEEEEECCCCCCCEEEEEECCCCCEEEHHHHHHHHCCCCCCCEEEEEECHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA