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The map label for this gene is xerC [H]

Identifier: 116328183

GI number: 116328183

Start: 1764925

End: 1765860

Strand: Direct

Name: xerC [H]

Synonym: LBL_1507

Alternate gene names: 116328183

Gene position: 1764925-1765860 (Clockwise)

Preceding gene: 116328182

Following gene: 116328184

Centisome position: 48.83

GC content: 39.0

Gene sequence:

>936_bases
TTGGGTGATTATCCTTTCCAATTTCCTAAATTTCCTTCCTCGTTTCTCAATGAAACTGCGGAAAAATTCATAAACTACTT
AAAAATTGAAAAGAACTATTCGCAAAATACCATAAATGCTTATAGTATAGATTTGAAATTCTTCTTCGAATTTTGCGAAA
AAGAACAACTCGATATACTTCAGGTTGAACCGGTAGATATCCGGTCTTACTTCTCTTATCTTGCAAAAGAACAGGATCTC
GACCGCAGATCCCAAAGTAGGAAGTTATCCTCTCTTAGAACCTTTTATAAAGTTCTCCTCCGAGACGATCAGATCGAGTC
CAATCCGGCTACGCGGATCAGTTTCCCGAAAGTCAGGAAAGAAGTCCCTAAAAATTTCAGAATCAATGAAACCGAAGAGA
TCCTAGAATTCGAGGCGGAAAGGACTTCCGAGATTTTAGAAATTAGGGACAAGGCTATGATCGAAGTTTTATACTCTTCC
GGTCTTCGAGTATTCGAGCTTGTAAATGCAAAACTAGGTTCCCTTTCCAAGGATCTAACAGTTCTTAAAGTTCTCGGGAA
AGGGCAAAAGGAAAGATTTGTGTATTTTGGTAAGGAAGCCGTCGATTCTTTACGGCGATATTTGGAATATAGAAACGTTT
CTTTTCCGGATGTGAAAGAAATTTTTCTGAATCAAAAAGGAAAGAAACTGACGACTCGAGGCGTGCGTTATATTTTGAAT
GAGAGAAGAAAAAAAATGGGTTGGGAAAAGAAGATCACCCCCCATAAGTTCAGACATACCTTTGCGACCGATCTCCTAGA
CGCGGGGGCGGATATCAGAGCGGTACAGGAATTACTCGGACATTCTTCTCTTTCCACAACTCAGATTTATTTGAGTGTAA
GTAAGGAAAAAATCAAAGAAGTTTATAGAAAGGCTCATCCTCATGCCAGAAAATAA

Upstream 100 bases:

>100_bases
TCTTTGCAAAAAATCTACGATTGGGTTCGAGAAAGAAAAAACGAATTTCAAAAACCTTCCGATATTTAGTAGGACATATT
GTATTGTATGGAGAATTCAG

Downstream 100 bases:

>100_bases
AATTCGTTCCACAACTATTCTTTGTGTACGTAAAAGCGGAAAAGTCGCCATCGGTGGCGACGGTCAGGTTTCTATGGGAA
ACACCGTCATGAAAAACACC

Product: tyrosine site-specific recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MGDYPFQFPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLAKEQDL
DRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEIRDKAMIEVLYSS
GLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILN
ERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK

Sequences:

>Translated_311_residues
MGDYPFQFPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLAKEQDL
DRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEIRDKAMIEVLYSS
GLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILN
ERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK
>Mature_310_residues
GDYPFQFPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLAKEQDLD
RRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEIRDKAMIEVLYSSG
LRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILNE
RRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=33.445945945946, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=36.1774744027304, Blast_Score=188, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36645; Mature: 36513

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDYPFQFPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCEE
QVEPVDIRSYFSYLAKEQDLDRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRK
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
EVPKNFRINETEEILEFEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSKDLT
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
VLKVLGKGQKERFVYFGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILN
HHHHHCCCCHHHEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
ERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKE
HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECHHHHHH
VYRKAHPHARK
HHHHCCCCCCC
>Mature Secondary Structure 
GDYPFQFPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCEE
QVEPVDIRSYFSYLAKEQDLDRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRK
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
EVPKNFRINETEEILEFEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSKDLT
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
VLKVLGKGQKERFVYFGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILN
HHHHHCCCCHHHEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
ERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKE
HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECHHHHHH
VYRKAHPHARK
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA