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The map label for this gene is dedA [H]

Identifier: 116328178

GI number: 116328178

Start: 1759687

End: 1760325

Strand: Direct

Name: dedA [H]

Synonym: LBL_1502

Alternate gene names: 116328178

Gene position: 1759687-1760325 (Clockwise)

Preceding gene: 116328171

Following gene: 116328180

Centisome position: 48.68

GC content: 39.12

Gene sequence:

>639_bases
ATGACTTTTCAGGAAACTTTAATCCAAATTCTAAACCGCTTCTCCGAAACAAGCCCGATTTTTCTCTGGCTCTTTTTTAC
ATTTTCCAATTTCGCAGAAAACGTTTTCCCTCCTTGGCCGGGAGATACGATCACTGTGTTCGGGGGATTTTTGGTCGCGA
GAAATCTCGATTCATTCGGCTGGCCGGAATTGATTACAAGCACCTTAGTGGGAAATTTGTCGGGGGCCTGGGTCATGTAT
CGTTTCGGGCAAATCTTTTTGTATTGGATCAAGAAAAAAGAATTTCCGTTTAAGGATTCTATTTACGATGAAAAATCCAT
TGAAAAAACCTTAGCTTGGTTTCAGAAGAATTCCGTTTTAGTCGTTTTGTTTAGTCGGTTCTCGGCGGGAATTCGGTTTT
TTGTTTCGATTGTCGCAGGAATAGTGAAGATGGATCCAATCCTTTTTTTCGGATGTTTTGGTGTGGCTGTTATTCTTTGG
TGTGGAAGCTTAATCGTTTCCGGTTTTTATTTGGGCTCTCATTGGGAATACATTTTGGGTTTTTTAGAGATTTATAATAG
AATCGTCATTACATTAATTGTTCTCATTGCGCTTTTGTTTTACTGGTATCGCAAACAAAAAGCGGTTAAAATGAACTGA

Upstream 100 bases:

>100_bases
GGTCGGAGATAGAACGATACAAAGATTGAAAACGAATAGGGTTCACTTTTTTTACTTGAACCCTACGCTAGATCATTGAC
AATTCTTTTATTCTGACTTC

Downstream 100 bases:

>100_bases
TAAAAAGGAATTTTATTTTTTACGAGTCTTTTCTTCTTTTGGAAATTCGTGAGTCAATTACTCACGAAGATTGTGGGAGT
TCCTACATTTTACAATTTTA

Product: DedA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTFQETLIQILNRFSETSPIFLWLFFTFSNFAENVFPPWPGDTITVFGGFLVARNLDSFGWPELITSTLVGNLSGAWVMY
RFGQIFLYWIKKKEFPFKDSIYDEKSIEKTLAWFQKNSVLVVLFSRFSAGIRFFVSIVAGIVKMDPILFFGCFGVAVILW
CGSLIVSGFYLGSHWEYILGFLEIYNRIVITLIVLIALLFYWYRKQKAVKMN

Sequences:

>Translated_212_residues
MTFQETLIQILNRFSETSPIFLWLFFTFSNFAENVFPPWPGDTITVFGGFLVARNLDSFGWPELITSTLVGNLSGAWVMY
RFGQIFLYWIKKKEFPFKDSIYDEKSIEKTLAWFQKNSVLVVLFSRFSAGIRFFVSIVAGIVKMDPILFFGCFGVAVILW
CGSLIVSGFYLGSHWEYILGFLEIYNRIVITLIVLIALLFYWYRKQKAVKMN
>Mature_211_residues
TFQETLIQILNRFSETSPIFLWLFFTFSNFAENVFPPWPGDTITVFGGFLVARNLDSFGWPELITSTLVGNLSGAWVMYR
FGQIFLYWIKKKEFPFKDSIYDEKSIEKTLAWFQKNSVLVVLFSRFSAGIRFFVSIVAGIVKMDPILFFGCFGVAVILWC
GSLIVSGFYLGSHWEYILGFLEIYNRIVITLIVLIALLFYWYRKQKAVKMN

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24645; Mature: 24514

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQETLIQILNRFSETSPIFLWLFFTFSNFAENVFPPWPGDTITVFGGFLVARNLDSFG
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
WPELITSTLVGNLSGAWVMYRFGQIFLYWIKKKEFPFKDSIYDEKSIEKTLAWFQKNSVL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEE
VVLFSRFSAGIRFFVSIVAGIVKMDPILFFGCFGVAVILWCGSLIVSGFYLGSHWEYILG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEIYNRIVITLIVLIALLFYWYRKQKAVKMN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TFQETLIQILNRFSETSPIFLWLFFTFSNFAENVFPPWPGDTITVFGGFLVARNLDSFG
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
WPELITSTLVGNLSGAWVMYRFGQIFLYWIKKKEFPFKDSIYDEKSIEKTLAWFQKNSVL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEE
VVLFSRFSAGIRFFVSIVAGIVKMDPILFFGCFGVAVILWCGSLIVSGFYLGSHWEYILG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEIYNRIVITLIVLIALLFYWYRKQKAVKMN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]