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The map label for this gene is tnhA [H]

Identifier: 116328144

GI number: 116328144

Start: 1682042

End: 1683142

Strand: Reverse

Name: tnhA [H]

Synonym: LBL_1444

Alternate gene names: 116328144

Gene position: 1683142-1682042 (Counterclockwise)

Preceding gene: 116328145

Following gene: 116328143

Centisome position: 46.57

GC content: 38.87

Gene sequence:

>1101_bases
ATGAAAAGAAAAGTATATGTAGGAATGGATGTCCACAAAGAAACGATCCAAATCGCGTATTTAACGAGCAATTCAAAGGA
AATATTGAAAGAACAACAGATAAAACACAATGAAGTTCAAATCAAAAAGTTCATCAAAAAACTCAAAACAGAATGGAATG
AAATACATTGTTGTTACGAAGCGGGAGTAACCGGTTATCCACTTTACAGATATCTAAAGTCATTGGGAGTGAACTGTATC
CTTGTAGCGCCTGGAAAGATTCCAAGACAAAATACCGATAAGATCAAAACGGATAAAAGAGACGCGATCAAATTAGCGAG
ATTAATGCGAAGTGGAGAATTGGAATCGATTCATGTTCCCAGTGAAGAGGACGAAGCAGTAAGAGATTATTTAAGATCCC
GTGACAGTCTTCGTTTGGATTTAGGAAGGAATCGTCAAAGGTTGATGAAATTCTTATTAAGAAAAGACATAAAGTATTCC
ACAACGAAGTATTGGACGGTGAGTCATTACAAATGGTTGAACAATCTTCACTTTAACAACGAGATCCTTCAAGAGACGTT
TAACGATTATTATAGTCGAGTGAGAGTTCAAGAAGAGAATTTAAAATCCATGGATAAAAAGATACAAGAGATAGCGGAAA
GTGAACCGTATCGAGAGAAAGTGGGAATCTTAAGATGCTTTCGAGGAGTGGACTATTTAACGGCAATGTTCTCACTTTGT
GAGGTAAACGACTTCAAGCGATTCAAAACGGCCGGTTCGTTCATGAGTTTTCTTGGACTTGTTCCTGGAGAATATTCCAG
CGGTTCCAAAAGAAAACAAACAGGGATTACTAAAACAGGAAGTCCCAGACTTAGAAGGATTTTGACGGAAGCGGCTTGGC
AACATCGCTTCCCTGGAACAGGAAGTAAAATCATAACCGCACGTAGATCGGGACAACCTGCATTAGTCGTTGCTTTAGCG
GAAAAAGCTTCTCTCAGGTTACACAAGAAATTTCGCAATCTACAGAGGAAAAACTCCTCAAGTGATGATAACGGCAGTTT
CAAGAGAGTTATCCGGATTTCTTTGGGCGGCAATGAATCTTGTAGCCTAAAGTTAGAGTAA

Upstream 100 bases:

>100_bases
AGCGCCATATCAGACAAAATGGCGCCCCTTCTGGGCTTGAAAAACGTGGGTTAGATGCGAGCATTTACCACAAAACAAAA
AAACCAACAGAAGGAACGCA

Downstream 100 bases:

>100_bases
TGTTCATCCAATAATTGAATTCGTTAGAGAAGATGTACGATAAAGGAGGAATACTTGTTGGCGAGAGTGTTGAAGCAAAT
TTGAATTTCAAATTTGACCT

Product: transposase IS1533

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKSMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFSLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE

Sequences:

>Translated_366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKSMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFSLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE
>Mature_366_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKSMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFSLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNESCSLKLE

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42518; Mature: 42518

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHH
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKSMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFSLC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALAEKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNES
CCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
CSLKLE
EEEEEC
>Mature Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHH
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKSMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFSLC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALAEKASLRLHKKFRNLQRKNSSSDDNGSFKRVIRISLGGNES
CCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
CSLKLE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8171119 [H]