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The map label for this gene is 116328079

Identifier: 116328079

GI number: 116328079

Start: 1609293

End: 1609841

Strand: Direct

Name: 116328079

Synonym: LBL_1376

Alternate gene names: NA

Gene position: 1609293-1609841 (Clockwise)

Preceding gene: 116328077

Following gene: 116328080

Centisome position: 44.52

GC content: 40.98

Gene sequence:

>549_bases
ATGTCAGCTAAAAAAGAAATCTGGGAAGAATGTTCCATACTAATCCGTAAGACCGGAGATCGAAGTTCCTATGAAAAATT
TCTCCAACTCGTAACCGGAATTCTCAGATCGTATCTGATTCCACGAATTAGCAATCCAGAAGACAGGGAAGATTTGGTTC
AGGAAATTTTAATCGGACTTCATAAGGCTAGGGATTCTTATCGCGAGGATCGTCATCCGGCACCTTGGATTTTTGCGATT
GCAAGATACAAAACGATTGATTATCTGAGAAAGAAGAAAGTAGGAGATCGGACTTTCAGTATGGATCATCTGGAAATTTT
CGCTTCTCCAGAACCGGTTCAAGAAGAACTAGAGAACGTCAGAGAGATCCTCAAAAAATGGCTGAACGTTTTGGATGAAA
GGCAGAAGCAAATTCTCACTCATCTCAAACTTGAAGGGATGAGTGTACGAGAAGTTTCCGAACGAACGGGCCTTTCCGAA
TTCAATGTCAAGGTCATTACTCATCGAGCGATTCAAAAGATTAGAAAGCATTTTTCACTCGATCTCTGA

Upstream 100 bases:

>100_bases
GCTCGGCAATTTTCGTTTCAAATGTTACGATCCGTAGAAAGTAATATTGTAAATTTTGGCCGGGCTCTTATCTTTTCGAA
GGTTCCAAGCGGTTCGTTAC

Downstream 100 bases:

>100_bases
CAAAATAGCGGTCAAGATCGTCCAAGAATTAACATGATTTCCCATCTTCCGAGCGGCATTCGAGTAGAGTTCTTAGATTC
TATTTCCTTAATTTCTAAAC

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSAKKEIWEECSILIRKTGDRSSYEKFLQLVTGILRSYLIPRISNPEDREDLVQEILIGLHKARDSYREDRHPAPWIFAI
ARYKTIDYLRKKKVGDRTFSMDHLEIFASPEPVQEELENVREILKKWLNVLDERQKQILTHLKLEGMSVREVSERTGLSE
FNVKVITHRAIQKIRKHFSLDL

Sequences:

>Translated_182_residues
MSAKKEIWEECSILIRKTGDRSSYEKFLQLVTGILRSYLIPRISNPEDREDLVQEILIGLHKARDSYREDRHPAPWIFAI
ARYKTIDYLRKKKVGDRTFSMDHLEIFASPEPVQEELENVREILKKWLNVLDERQKQILTHLKLEGMSVREVSERTGLSE
FNVKVITHRAIQKIRKHFSLDL
>Mature_181_residues
SAKKEIWEECSILIRKTGDRSSYEKFLQLVTGILRSYLIPRISNPEDREDLVQEILIGLHKARDSYREDRHPAPWIFAIA
RYKTIDYLRKKKVGDRTFSMDHLEIFASPEPVQEELENVREILKKWLNVLDERQKQILTHLKLEGMSVREVSERTGLSEF
NVKVITHRAIQKIRKHFSLDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21571; Mature: 21440

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKEIWEECSILIRKTGDRSSYEKFLQLVTGILRSYLIPRISNPEDREDLVQEILIGL
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
HKARDSYREDRHPAPWIFAIARYKTIDYLRKKKVGDRTFSMDHLEIFASPEPVQEELENV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHH
REILKKWLNVLDERQKQILTHLKLEGMSVREVSERTGLSEFNVKVITHRAIQKIRKHFSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
DL
CC
>Mature Secondary Structure 
SAKKEIWEECSILIRKTGDRSSYEKFLQLVTGILRSYLIPRISNPEDREDLVQEILIGL
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
HKARDSYREDRHPAPWIFAIARYKTIDYLRKKKVGDRTFSMDHLEIFASPEPVQEELENV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHH
REILKKWLNVLDERQKQILTHLKLEGMSVREVSERTGLSEFNVKVITHRAIQKIRKHFSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA