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The map label for this gene is fliN-2 [H]

Identifier: 116328051

GI number: 116328051

Start: 1580050

End: 1580574

Strand: Direct

Name: fliN-2 [H]

Synonym: LBL_1346

Alternate gene names: 116328051

Gene position: 1580050-1580574 (Clockwise)

Preceding gene: 116328046

Following gene: 116328056

Centisome position: 43.71

GC content: 47.81

Gene sequence:

>525_bases
ATGGGAGAAGGGTCACTCTCACAGGAAGATATAGACGCTCTTTTAACAGGTGGCGGCGGTGAAGCAGCCGCACCTGCTGA
AACCGGAAGTGGGTCTGATTTTAATCTAAGCGGAGAACTGGACTCTCTTCTGGGCGGCGGTAGTGCCGGTGGAGAAGCGT
CTGGTGAGAGTGGTGGAACCGATTCTCCTTCTTTTGCAGATATTTCTGCCGCCCTCGGGCCTTCGCCGACTCCTTCTGCT
CCTAGATCGGCCACGCGTCAATCTGCCTCGACCCAATCCACAAACTTAAATCTGCTGATGGATGTAAATCTAGCGCTTAC
AGTAGAGCTAGGTAGAACGAATATGTTCATCAAAGATGTCAACGGTTTGAACGAAGGTATTGTTGTAGAATTGGATAAGA
ATGTGGGTGAAGATTTGGACATTCTCGCGAACGGCCATTTAGTTGGAAGGGGTAAACTTGTGGCAATGGATGATTTCTAT
GGAATTCAAATTACGGAAATTGTGGATCAAAGCAGAAGACTTTAA

Upstream 100 bases:

>100_bases
CAAAGCGTACGATACCTCGTTCGAATCTGAAAATAACTCTTGTAGGAATCTAAAATTCTGTCGATTTCTTTACTATCGGA
TTTGTAAAGGAGAAGGAAAA

Downstream 100 bases:

>100_bases
ATTCGAAATCGCATATTTTCGTTTCAAGTTGTTTTCGACATTTGTAAAGATAATTTCTAAATTTTATAAGTGAGCAACAA
TCTTTCCGTAACAACTTCCT

Product: endoflagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MGEGSLSQEDIDALLTGGGGEAAAPAETGSGSDFNLSGELDSLLGGGSAGGEASGESGGTDSPSFADISAALGPSPTPSA
PRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFY
GIQITEIVDQSRRL

Sequences:

>Translated_174_residues
MGEGSLSQEDIDALLTGGGGEAAAPAETGSGSDFNLSGELDSLLGGGSAGGEASGESGGTDSPSFADISAALGPSPTPSA
PRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFY
GIQITEIVDQSRRL
>Mature_173_residues
GEGSLSQEDIDALLTGGGGEAAAPAETGSGSDFNLSGELDSLLGGGSAGGEASGESGGTDSPSFADISAALGPSPTPSAP
RSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYG
IQITEIVDQSRRL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=80, Percent_Identity=48.75, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 17625; Mature: 17493

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEGSLSQEDIDALLTGGGGEAAAPAETGSGSDFNLSGELDSLLGGGSAGGEASGESGGT
CCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCC
DSPSFADISAALGPSPTPSAPRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDV
CCCCCCEEHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCEEEEEEECCCEEEEEEC
NGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL
CCCCCCEEEEECCCCCCCEEEEECCEEECCCEEEEECCCCCEEHHHHHHHHCCC
>Mature Secondary Structure 
GEGSLSQEDIDALLTGGGGEAAAPAETGSGSDFNLSGELDSLLGGGSAGGEASGESGGT
CCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCC
DSPSFADISAALGPSPTPSAPRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDV
CCCCCCEEHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCEEEEEEECCCEEEEEEC
NGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL
CCCCCCEEEEECCCCCCCEEEEECCEEECCCEEEEECCCCCEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]