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The map label for this gene is bphB [H]

Identifier: 116328009

GI number: 116328009

Start: 1528387

End: 1529502

Strand: Direct

Name: bphB [H]

Synonym: LBL_1300

Alternate gene names: 116328009

Gene position: 1528387-1529502 (Clockwise)

Preceding gene: 116328008

Following gene: 116328013

Centisome position: 42.29

GC content: 37.9

Gene sequence:

>1116_bases
ATGAAATTAAAACCGAAAATATTGATTGTAGACGATAAGCCTGAAAACTTGATCGCTTTGGAAGTTGTACTTAAGAATTT
GGATGTAGAACTCGTTAAAGCTCTTAGCGGAAACGATGCTCTGAAGGCGATTTTACATCATGAGTTCGCCTTGGCTTTGT
TGGATATACAAATGCCGGAGATGGACGGATACGAACTGGCAGGTATCATAAGAGAAGAAAGTAAAACTGCACATTTACCG
TTCATTTTTATTTCCGCGGTTTATACGGATAACCTGAACGTATTTAAGGGTTATGAAAAAGGGGCGTTCAGCTTTATCAC
AAAACCGTTTCAACCTGAGATTTTAATCAATAAGGTTCAATTCTTTATAGATAAATATATTCAGGATATTACGTTGCGCG
AGTTGAACGAAAGTCTCAAACAGAAAAATCTAGAATTAGAATATTCAAACCGAGAGTTAGATGCTTTTTGTTATTCGGTT
TCCCACGATTTAAAGGCTCCTCTGCGCGGGATAAGGGGCTACACAAAGATATTAAAAGAGGATTATAAAGATAAGTTAGA
CGAAGAGGGAGAAAGGATACTCGGATTAGTCATCGAAAACTCCCTGAAAATGAGTACCTTAATTGATAGTCTTCTACTTT
TATCCAAGTTGGGAAAAAAGGATATGAGGAAAAATCCGATCAATATGAATGAATTGGTGAATAGGATTTTGGAGGAGTTT
CAGGAGGATTTAAAAAAGGGAAAGTTGGAATTGGAAGTGAAAAATCTTCTTCCTATTATGGGTGACGCGGAATTGTTAAA
GCAAGTTTTGATCAATCTTATATCCAATGCGATCAAGTATTCCTCTAAGAAGGAAAATCCAAAAGTTGAAATTGGGTGTT
CGGAGGAGGAAAAGGAAATTACGTATTATGTAAAAGACAACGGCGCCGGTTTTAGCATGCAATATGTGAACAAGCTCTTC
GGAGTATTCCAGAGATTACATGAAAATAGTGAATTCGAAGGAATCGGAATTGGACTCGCAATCGTTCAAAGAATCGTGTT
ACGTCACGGAGGTAGAGTTTGGGCGGAGGGAGAAGTGGATCAGGGAGCCACGTTTTATTTTGCCTTACCAAGATGA

Upstream 100 bases:

>100_bases
TGCAGGTGCAAATGATTATATATCTAAGCCGGTAGATGTGGAGCGATTGTTTTCCTTGATGAGAGTCTGGTTAAGCAGAT
AGCGGGTTGTGTTAAAAATC

Downstream 100 bases:

>100_bases
GGACATTTTCCTTTTAGAATAACGTGAATTCGCGGAAAAAGTTTAGGCGAATAAAAACTGAAGTGTAACTCCTTGAATTG
AGTGTTGTTGCCCAGATGCC

Product: sensor histidine kinase and response regulator of a two component complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKLKPKILIVDDKPENLIALEVVLKNLDVELVKALSGNDALKAILHHEFALALLDIQMPEMDGYELAGIIREESKTAHLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKYIQDITLRELNESLKQKNLELEYSNRELDAFCYSV
SHDLKAPLRGIRGYTKILKEDYKDKLDEEGERILGLVIENSLKMSTLIDSLLLLSKLGKKDMRKNPINMNELVNRILEEF
QEDLKKGKLELEVKNLLPIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGCSEEEKEITYYVKDNGAGFSMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGEVDQGATFYFALPR

Sequences:

>Translated_371_residues
MKLKPKILIVDDKPENLIALEVVLKNLDVELVKALSGNDALKAILHHEFALALLDIQMPEMDGYELAGIIREESKTAHLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKYIQDITLRELNESLKQKNLELEYSNRELDAFCYSV
SHDLKAPLRGIRGYTKILKEDYKDKLDEEGERILGLVIENSLKMSTLIDSLLLLSKLGKKDMRKNPINMNELVNRILEEF
QEDLKKGKLELEVKNLLPIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGCSEEEKEITYYVKDNGAGFSMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGEVDQGATFYFALPR
>Mature_371_residues
MKLKPKILIVDDKPENLIALEVVLKNLDVELVKALSGNDALKAILHHEFALALLDIQMPEMDGYELAGIIREESKTAHLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKYIQDITLRELNESLKQKNLELEYSNRELDAFCYSV
SHDLKAPLRGIRGYTKILKEDYKDKLDEEGERILGLVIENSLKMSTLIDSLLLLSKLGKKDMRKNPINMNELVNRILEEF
QEDLKKGKLELEVKNLLPIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGCSEEEKEITYYVKDNGAGFSMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGEVDQGATFYFALPR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=222, Percent_Identity=29.7297297297297, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=25.6410256410256, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786912, Length=224, Percent_Identity=29.4642857142857, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789149, Length=270, Percent_Identity=25.9259259259259, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=25.7918552036199, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=28, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786783, Length=269, Percent_Identity=23.4200743494424, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790861, Length=224, Percent_Identity=25.8928571428571, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693157, Length=256, Percent_Identity=25.390625, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790346, Length=217, Percent_Identity=28.110599078341, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790551, Length=295, Percent_Identity=25.4237288135593, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788393, Length=245, Percent_Identity=26.1224489795918, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081816, Length=247, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788713, Length=256, Percent_Identity=23.828125, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 42388; Mature: 42388

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKPKILIVDDKPENLIALEVVLKNLDVELVKALSGNDALKAILHHEFALALLDIQMPE
CCCCCCEEEEECCCCCEEHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC
MDGYELAGIIREESKTAHLPFIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQ
CCCCHHHHHHHHCCCCCCCCEEEEEEHHCCCCCEEECCCCCHHHHHCCCCCCHHHHHHHH
FFIDKYIQDITLRELNESLKQKNLELEYSNRELDAFCYSVSHDLKAPLRGIRGYTKILKE
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYKDKLDEEGERILGLVIENSLKMSTLIDSLLLLSKLGKKDMRKNPINMNELVNRILEEF
HHHHHHHHCHHHEEHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHH
QEDLKKGKLELEVKNLLPIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGCSEEEKEI
HHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEE
TYYVKDNGAGFSMQYVNKLFGVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGEVD
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCEEECCCCC
QGATFYFALPR
CCCEEEEECCC
>Mature Secondary Structure
MKLKPKILIVDDKPENLIALEVVLKNLDVELVKALSGNDALKAILHHEFALALLDIQMPE
CCCCCCEEEEECCCCCEEHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC
MDGYELAGIIREESKTAHLPFIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQ
CCCCHHHHHHHHCCCCCCCCEEEEEEHHCCCCCEEECCCCCHHHHHCCCCCCHHHHHHHH
FFIDKYIQDITLRELNESLKQKNLELEYSNRELDAFCYSVSHDLKAPLRGIRGYTKILKE
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYKDKLDEEGERILGLVIENSLKMSTLIDSLLLLSKLGKKDMRKNPINMNELVNRILEEF
HHHHHHHHCHHHEEHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHH
QEDLKKGKLELEVKNLLPIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGCSEEEKEI
HHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEE
TYYVKDNGAGFSMQYVNKLFGVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGEVD
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCEEECCCCC
QGATFYFALPR
CCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]