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The map label for this gene is panD

Identifier: 116327995

GI number: 116327995

Start: 1508517

End: 1508867

Strand: Reverse

Name: panD

Synonym: LBL_1285

Alternate gene names: 116327995

Gene position: 1508867-1508517 (Counterclockwise)

Preceding gene: 116327996

Following gene: 116327994

Centisome position: 41.75

GC content: 44.73

Gene sequence:

>351_bases
ATGCAGATAACCGTAATGAAAGGTAAAATTCACCGGGCTACGGTAACGGACGCGGATTTAAATTACGAAGGCAGTCTGAC
CGTGGATATGGACCTCGTAGACGCAGCAGGAATGCGTGTTTATGAGAAGGTTTCTGTGGTAAACATAAACAATGGCGCTC
GCTTTGAAACCTATATCATTGAAGGAAAGCGCGGTTCCGGAGAAATTTGTCTAAACGGAGCGGCGGCAAGGCTCGGGATG
AAAGGCGACAAAATCATCGTCATCACTTATGCTCAAGTGGAAGAAAACGAACTTCCTATCGACTATATCCCCAAAGTAGT
TCACGTTGACGAAAATAATCGAAAACGTTAA

Upstream 100 bases:

>100_bases
ATACGTTGAATACCAAAATTCACTTTTTTAAGAGGAAAACGCTTTTAAATATCTCAGGTAAAATTTTTAAGGTACTATTT
AGCGAGTAGCGGAGCCTAAA

Downstream 100 bases:

>100_bases
TTTTTACCAAAAAACGGCTTTCCCAATCTAAGTTCCGGCTTTCAAAGACCGATATAAATAAGTAAGAATTCGATCGGACC
AGAATAATTATGAAACCTTT

Product: aspartate alpha-decarboxylase

Products: NA

Alternate protein names: Aspartate alpha-decarboxylase

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MQITVMKGKIHRATVTDADLNYEGSLTVDMDLVDAAGMRVYEKVSVVNINNGARFETYIIEGKRGSGEICLNGAAARLGM
KGDKIIVITYAQVEENELPIDYIPKVVHVDENNRKR

Sequences:

>Translated_116_residues
MQITVMKGKIHRATVTDADLNYEGSLTVDMDLVDAAGMRVYEKVSVVNINNGARFETYIIEGKRGSGEICLNGAAARLGM
KGDKIIVITYAQVEENELPIDYIPKVVHVDENNRKR
>Mature_116_residues
MQITVMKGKIHRATVTDADLNYEGSLTVDMDLVDAAGMRVYEKVSVVNINNGARFETYIIEGKRGSGEICLNGAAARLGM
KGDKIIVITYAQVEENELPIDYIPKVVHVDENNRKR

Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine

COG id: COG0853

COG function: function code H; Aspartate 1-decarboxylase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the panD family

Homologues:

Organism=Escherichia coli, GI1786323, Length=110, Percent_Identity=40.9090909090909, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAND_LEPBJ (Q04TD7)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_800591.1
- ProteinModelPortal:   Q04TD7
- SMR:   Q04TD7
- STRING:   Q04TD7
- GeneID:   4411023
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_1234
- eggNOG:   COG0853
- HOGENOM:   HBG302821
- OMA:   LYSKIHR
- PhylomeDB:   Q04TD7
- ProtClustDB:   PRK05449
- BioCyc:   LBOR355277:LBJ_1234-MONOMER
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00446
- InterPro:   IPR009010
- InterPro:   IPR003190
- Gene3D:   G3DSA:2.40.40.20
- PANTHER:   PTHR21012
- PIRSF:   PIRSF006246
- ProDom:   PD009294
- TIGRFAMs:   TIGR00223

Pfam domain/function: PF02261 Asp_decarbox; SSF50692 Asp_decarb_fold

EC number: =4.1.1.11

Molecular weight: Translated: 12870; Mature: 12870

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: ACT_SITE 25-25 ACT_SITE 58-58 BINDING 57-57

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITVMKGKIHRATVTDADLNYEGSLTVDMDLVDAAGMRVYEKVSVVNINNGARFETYII
CEEEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEE
EGKRGSGEICLNGAAARLGMKGDKIIVITYAQVEENELPIDYIPKVVHVDENNRKR
ECCCCCCCEEEECCEEECCCCCCEEEEEEEEEECCCCCCHHHCCEEEEECCCCCCC
>Mature Secondary Structure
MQITVMKGKIHRATVTDADLNYEGSLTVDMDLVDAAGMRVYEKVSVVNINNGARFETYII
CEEEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEE
EGKRGSGEICLNGAAARLGMKGDKIIVITYAQVEENELPIDYIPKVVHVDENNRKR
ECCCCCCCEEEECCEEECCCCCCEEEEEEEEEECCCCCCHHHCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA