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The map label for this gene is 116327874

Identifier: 116327874

GI number: 116327874

Start: 1369520

End: 1370116

Strand: Direct

Name: 116327874

Synonym: LBL_1158

Alternate gene names: NA

Gene position: 1369520-1370116 (Clockwise)

Preceding gene: 116327873

Following gene: 116327880

Centisome position: 37.89

GC content: 40.2

Gene sequence:

>597_bases
TTGAAGGAAAGAATTCTTTTTGTAGTTATTTTACTTTTTGGAATTGGTCTGGGTTTTTTCGGTTGGAAGGTATGGAAATT
CGGATCGGTTAGGATTCAAAAACCTATTTTTGTGGAAGAATGCTCTAAGGCCGTTTTGAAGAATACTCAAAACCTGGAAA
TTCCTTTGAATAAAATCCCAGGCAAACTCAAGTTAGTCTATTTTGGATTTTCACATTGTCCGGATATGTGTCCAAGGGCG
TTGATAGATATGTCTTCGGCTGTTAAGGAACTAGGAGACGAGGGAAAGAATCTGACGCCCATATTTATCAGTGTGGATCC
GGAGAGGGATTCACCCGAATTACTTGCAAAATATTTAAAACAGTTTCCGGGCGAAAGATTGATCGCTTTAACGGGTGAAA
AATCCGAACTTGACTATTTGCAGAATGCGTTCGGTGTTGTGTCTAAAAAAGTCAGCGCGCCTCAGTTGGAAGAAGGGTAT
ACGGTGGACCACACGGTATTTATTTATGTTTTAGACGATCAAAGTAGAATTCTAATGACCTTTCCCGGAGGGACGGACGG
AAAAACTCTTGCGGAAGGGATTCGGAAATTTTTTTAA

Upstream 100 bases:

>100_bases
GTCGAAACGGTATTTACCGTGTAACGTTTTGGACACAGGGCGATTTATTTCTATTTTTTATACGGATTCAAGTTGCGTCT
AACGTATTTAGGTGAAGATT

Downstream 100 bases:

>100_bases
TATCCAATTTGAAGTCGAGCAGTTTATAAGTTCGAGTTCCAAAAAAAAACGGATTTAGAATTTCAGGAAATTTTAAACTT
ATAATCGTAAAAATGATCTA

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKERILFVVILLFGIGLGFFGWKVWKFGSVRIQKPIFVEECSKAVLKNTQNLEIPLNKIPGKLKLVYFGFSHCPDMCPRA
LIDMSSAVKELGDEGKNLTPIFISVDPERDSPELLAKYLKQFPGERLIALTGEKSELDYLQNAFGVVSKKVSAPQLEEGY
TVDHTVFIYVLDDQSRILMTFPGGTDGKTLAEGIRKFF

Sequences:

>Translated_198_residues
MKERILFVVILLFGIGLGFFGWKVWKFGSVRIQKPIFVEECSKAVLKNTQNLEIPLNKIPGKLKLVYFGFSHCPDMCPRA
LIDMSSAVKELGDEGKNLTPIFISVDPERDSPELLAKYLKQFPGERLIALTGEKSELDYLQNAFGVVSKKVSAPQLEEGY
TVDHTVFIYVLDDQSRILMTFPGGTDGKTLAEGIRKFF
>Mature_198_residues
MKERILFVVILLFGIGLGFFGWKVWKFGSVRIQKPIFVEECSKAVLKNTQNLEIPLNKIPGKLKLVYFGFSHCPDMCPRA
LIDMSSAVKELGDEGKNLTPIFISVDPERDSPELLAKYLKQFPGERLIALTGEKSELDYLQNAFGVVSKKVSAPQLEEGY
TVDHTVFIYVLDDQSRILMTFPGGTDGKTLAEGIRKFF

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=124, Percent_Identity=41.1290322580645, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI281182727, Length=141, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI281182722, Length=141, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI281182716, Length=141, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI153791313, Length=141, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17531419, Length=118, Percent_Identity=35.5932203389831, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319498, Length=140, Percent_Identity=32.8571428571429, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=138, Percent_Identity=34.7826086956522, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19920710, Length=115, Percent_Identity=42.6086956521739, Blast_Score=92, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22268; Mature: 22268

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERILFVVILLFGIGLGFFGWKVWKFGSVRIQKPIFVEECSKAVLKNTQNLEIPLNKIP
CCCHHHHHHHHHHHHHHHHHHHHHEEECCEEECCCHHHHHHHHHHHCCCCCCEEEHHHCC
GKLKLVYFGFSHCPDMCPRALIDMSSAVKELGDEGKNLTPIFISVDPERDSPELLAKYLK
CEEEEEEECCHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH
QFPGERLIALTGEKSELDYLQNAFGVVSKKVSAPQLEEGYTVDHTVFIYVLDDQSRILMT
HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCEEEEE
FPGGTDGKTLAEGIRKFF
CCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MKERILFVVILLFGIGLGFFGWKVWKFGSVRIQKPIFVEECSKAVLKNTQNLEIPLNKIP
CCCHHHHHHHHHHHHHHHHHHHHHEEECCEEECCCHHHHHHHHHHHCCCCCCEEEHHHCC
GKLKLVYFGFSHCPDMCPRALIDMSSAVKELGDEGKNLTPIFISVDPERDSPELLAKYLK
CEEEEEEECCHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH
QFPGERLIALTGEKSELDYLQNAFGVVSKKVSAPQLEEGYTVDHTVFIYVLDDQSRILMT
HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCEEEEE
FPGGTDGKTLAEGIRKFF
CCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]