| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is popC [H]
Identifier: 116327628
GI number: 116327628
Start: 1000985
End: 1001512
Strand: Direct
Name: popC [H]
Synonym: LBL_0861
Alternate gene names: 116327628
Gene position: 1000985-1001512 (Clockwise)
Preceding gene: 116327627
Following gene: 116327629
Centisome position: 27.69
GC content: 38.45
Gene sequence:
>528_bases TTGAGACCGGCTCTTAGAACTATTCCTAACGAGATCGGGCAACTTCAAAATCTGCGGGAATTATATTTATATAGCAATCA ACTTACAGTTCTTCCTAAAGAACTCGAACGATTTAAGAATTTACAAAAGTTAGATTTATATAGTAACCAGCTTACAATTC TTCCTGACGAGATCGGACAACTTCAGAATCTGGAAGAGTTAGCTTTAGGTGCAAATCAACTTAGAACTATCCCCAATGAG ATCGGGCAACTTAAGGACTTGCAAGAATTACATTTAGATGGAAATCAGCTTACAATTCTTCCTAAAGAGATCGGACAACT TAAGAAGCTGGAAAAGTTAGATTTAAGCAATAATCAACTTACAACTCTTCCCAAAGAAATCGAACATCTGAAGAACTTGC GGCGTTTGGTTTTGAAAGGAAATAATTTTTCACCCCAAGAGAAGGAAAGAATTCGGAATCTCCTGCTGGAATACGAAATA GATGGGGAGTTGTTACGACGCAGACGCAGAAGGGGTTGGAGTTGGTGA
Upstream 100 bases:
>100_bases GAGCCATTCTAATTCGTTGGGAAAGAAAATCTGAAAATTATCTTGCATCTCTTTATCTCGCAAGCTCGATCATTGCTTTT AACTTTTTTGATAGGTAGTT
Downstream 100 bases:
>100_bases GATCAAGATGCCAGATATAACTGTAGTTGCGGTGGAAGGTTGAACATCTTCACGTTCAAAGTTTTATCGTTTGAAAAAAT CGATCGTTTGGCAACGGCTC
Product: leucine-rich repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MRPALRTIPNEIGQLQNLRELYLYSNQLTVLPKELERFKNLQKLDLYSNQLTILPDEIGQLQNLEELALGANQLRTIPNE IGQLKDLQELHLDGNQLTILPKEIGQLKKLEKLDLSNNQLTTLPKEIEHLKNLRRLVLKGNNFSPQEKERIRNLLLEYEI DGELLRRRRRRGWSW
Sequences:
>Translated_175_residues MRPALRTIPNEIGQLQNLRELYLYSNQLTVLPKELERFKNLQKLDLYSNQLTILPDEIGQLQNLEELALGANQLRTIPNE IGQLKDLQELHLDGNQLTILPKEIGQLKKLEKLDLSNNQLTTLPKEIEHLKNLRRLVLKGNNFSPQEKERIRNLLLEYEI DGELLRRRRRRGWSW >Mature_175_residues MRPALRTIPNEIGQLQNLRELYLYSNQLTVLPKELERFKNLQKLDLYSNQLTILPDEIGQLQNLEELALGANQLRTIPNE IGQLKDLQELHLDGNQLTILPKEIGQLKKLEKLDLSNNQLTTLPKEIEHLKNLRRLVLKGNNFSPQEKERIRNLLLEYEI DGELLRRRRRRGWSW
Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 22 LRR (leucine-rich) repeats [H]
Homologues:
Organism=Homo sapiens, GI238908508, Length=141, Percent_Identity=41.8439716312057, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI95113664, Length=129, Percent_Identity=46.5116279069767, Blast_Score=101, Evalue=4e-22, Organism=Homo sapiens, GI187829877, Length=149, Percent_Identity=41.6107382550336, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI62241040, Length=149, Percent_Identity=41.6107382550336, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI187829871, Length=149, Percent_Identity=41.6107382550336, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI16904383, Length=139, Percent_Identity=41.726618705036, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI41281398, Length=137, Percent_Identity=45.2554744525547, Blast_Score=97, Evalue=8e-21, Organism=Homo sapiens, GI190014581, Length=150, Percent_Identity=34.6666666666667, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI21361633, Length=137, Percent_Identity=38.6861313868613, Blast_Score=94, Evalue=7e-20, Organism=Homo sapiens, GI197333706, Length=140, Percent_Identity=39.2857142857143, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI34222199, Length=140, Percent_Identity=39.2857142857143, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI55770895, Length=134, Percent_Identity=36.5671641791045, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI8923909, Length=134, Percent_Identity=36.5671641791045, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI110825984, Length=139, Percent_Identity=39.568345323741, Blast_Score=89, Evalue=1e-18, Organism=Homo sapiens, GI194394161, Length=130, Percent_Identity=40.7692307692308, Blast_Score=88, Evalue=5e-18, Organism=Homo sapiens, GI40217803, Length=128, Percent_Identity=38.28125, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI6912638, Length=157, Percent_Identity=35.031847133758, Blast_Score=84, Evalue=5e-17, Organism=Homo sapiens, GI14249428, Length=138, Percent_Identity=39.1304347826087, Blast_Score=84, Evalue=6e-17, Organism=Homo sapiens, GI34577083, Length=136, Percent_Identity=38.9705882352941, Blast_Score=84, Evalue=6e-17, Organism=Homo sapiens, GI33285015, Length=160, Percent_Identity=38.125, Blast_Score=84, Evalue=6e-17, Organism=Homo sapiens, GI167466264, Length=149, Percent_Identity=35.5704697986577, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI197333692, Length=131, Percent_Identity=39.6946564885496, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI21245134, Length=131, Percent_Identity=39.6946564885496, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI256017174, Length=138, Percent_Identity=40.5797101449275, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI61742784, Length=141, Percent_Identity=39.0070921985816, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI33859670, Length=138, Percent_Identity=40.5797101449275, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI61742786, Length=141, Percent_Identity=39.0070921985816, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI256017180, Length=138, Percent_Identity=40.5797101449275, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI122937315, Length=138, Percent_Identity=36.9565217391304, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI153792305, Length=138, Percent_Identity=39.8550724637681, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI21389431, Length=152, Percent_Identity=35.5263157894737, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI299758423, Length=132, Percent_Identity=37.8787878787879, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI53729363, Length=132, Percent_Identity=37.8787878787879, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI53729359, Length=132, Percent_Identity=37.8787878787879, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI53729361, Length=132, Percent_Identity=37.8787878787879, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI45827729, Length=122, Percent_Identity=41.8032786885246, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI45827731, Length=122, Percent_Identity=41.8032786885246, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI63003903, Length=140, Percent_Identity=36.4285714285714, Blast_Score=81, Evalue=5e-16, Organism=Homo sapiens, GI291219891, Length=146, Percent_Identity=34.2465753424658, Blast_Score=80, Evalue=7e-16, Organism=Homo sapiens, GI157743290, Length=125, Percent_Identity=37.6, Blast_Score=80, Evalue=8e-16, Organism=Homo sapiens, GI65301141, Length=107, Percent_Identity=40.1869158878505, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI19923729, Length=132, Percent_Identity=32.5757575757576, Blast_Score=79, Evalue=2e-15, Organism=Homo sapiens, GI30181233, Length=138, Percent_Identity=34.7826086956522, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI154091020, Length=139, Percent_Identity=34.5323741007194, Blast_Score=74, Evalue=6e-14, Organism=Homo sapiens, GI223005922, Length=139, Percent_Identity=36.6906474820144, Blast_Score=70, Evalue=7e-13, Organism=Homo sapiens, GI28872863, Length=97, Percent_Identity=39.1752577319588, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI4503743, Length=139, Percent_Identity=35.9712230215827, Blast_Score=68, Evalue=4e-12, Organism=Homo sapiens, GI188528675, Length=143, Percent_Identity=33.5664335664336, Blast_Score=67, Evalue=6e-12, Organism=Homo sapiens, GI193788651, Length=110, Percent_Identity=42.7272727272727, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI24308207, Length=144, Percent_Identity=35.4166666666667, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI31542244, Length=122, Percent_Identity=36.0655737704918, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI194440719, Length=128, Percent_Identity=40.625, Blast_Score=64, Evalue=5e-11, Organism=Homo sapiens, GI34577057, Length=149, Percent_Identity=37.5838926174497, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71991525, Length=140, Percent_Identity=40, Blast_Score=95, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71991531, Length=140, Percent_Identity=40, Blast_Score=95, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71981152, Length=138, Percent_Identity=43.4782608695652, Blast_Score=92, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71981160, Length=138, Percent_Identity=43.4782608695652, Blast_Score=92, Evalue=1e-19, Organism=Caenorhabditis elegans, GI25143890, Length=196, Percent_Identity=33.6734693877551, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71993778, Length=169, Percent_Identity=36.094674556213, Blast_Score=83, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71993783, Length=169, Percent_Identity=36.094674556213, Blast_Score=83, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17537883, Length=129, Percent_Identity=35.6589147286822, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71998904, Length=129, Percent_Identity=35.6589147286822, Blast_Score=80, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71998900, Length=129, Percent_Identity=35.6589147286822, Blast_Score=80, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17552452, Length=142, Percent_Identity=35.2112676056338, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71985928, Length=109, Percent_Identity=37.6146788990826, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71999722, Length=109, Percent_Identity=38.5321100917431, Blast_Score=68, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71999724, Length=109, Percent_Identity=38.5321100917431, Blast_Score=68, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25150706, Length=109, Percent_Identity=38.5321100917431, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17553648, Length=113, Percent_Identity=37.1681415929204, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510303, Length=154, Percent_Identity=29.2207792207792, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17550406, Length=138, Percent_Identity=32.6086956521739, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322455, Length=132, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6324929, Length=127, Percent_Identity=35.4330708661417, Blast_Score=64, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319298, Length=143, Percent_Identity=34.2657342657343, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI221379725, Length=141, Percent_Identity=43.2624113475177, Blast_Score=98, Evalue=3e-21, Organism=Drosophila melanogaster, GI221379722, Length=141, Percent_Identity=43.2624113475177, Blast_Score=98, Evalue=3e-21, Organism=Drosophila melanogaster, GI19922294, Length=140, Percent_Identity=37.8571428571429, Blast_Score=93, Evalue=7e-20, Organism=Drosophila melanogaster, GI24584802, Length=153, Percent_Identity=42.483660130719, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24650336, Length=137, Percent_Identity=37.2262773722628, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI24650334, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=9e-18, Organism=Drosophila melanogaster, GI24650332, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=9e-18, Organism=Drosophila melanogaster, GI24650330, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=9e-18, Organism=Drosophila melanogaster, GI62472958, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007092, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI281362655, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI281362651, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI281362653, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI281362657, Length=137, Percent_Identity=37.2262773722628, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI24584804, Length=158, Percent_Identity=41.1392405063291, Blast_Score=84, Evalue=5e-17, Organism=Drosophila melanogaster, GI24641036, Length=126, Percent_Identity=39.6825396825397, Blast_Score=82, Evalue=1e-16, Organism=Drosophila melanogaster, GI45550188, Length=128, Percent_Identity=39.84375, Blast_Score=77, Evalue=5e-15, Organism=Drosophila melanogaster, GI19922622, Length=150, Percent_Identity=36, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI161078260, Length=140, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI161078264, Length=140, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI161078262, Length=140, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI45551891, Length=140, Percent_Identity=34.2857142857143, Blast_Score=73, Evalue=8e-14, Organism=Drosophila melanogaster, GI21358045, Length=140, Percent_Identity=34.2857142857143, Blast_Score=73, Evalue=8e-14, Organism=Drosophila melanogaster, GI19922706, Length=137, Percent_Identity=36.4963503649635, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI17933612, Length=143, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI24649579, Length=94, Percent_Identity=43.6170212765958, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24649585, Length=94, Percent_Identity=43.6170212765958, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI28572072, Length=94, Percent_Identity=43.6170212765958, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI24649583, Length=94, Percent_Identity=43.6170212765958, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI24649581, Length=94, Percent_Identity=43.6170212765958, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001611 [H]
Pfam domain/function: PF00560 LRR_1 [H]
EC number: NA
Molecular weight: Translated: 20647; Mature: 20647
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPALRTIPNEIGQLQNLRELYLYSNQLTVLPKELERFKNLQKLDLYSNQLTILPDEIGQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCHHHHHHCCCCEEECCHHHHH LQNLEELALGANQLRTIPNEIGQLKDLQELHLDGNQLTILPKEIGQLKKLEKLDLSNNQL HCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCH TTLPKEIEHLKNLRRLVLKGNNFSPQEKERIRNLLLEYEIDGELLRRRRRRGWSW HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MRPALRTIPNEIGQLQNLRELYLYSNQLTVLPKELERFKNLQKLDLYSNQLTILPDEIGQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCHHHHHHCCCCEEECCHHHHH LQNLEELALGANQLRTIPNEIGQLKDLQELHLDGNQLTILPKEIGQLKKLEKLDLSNNQL HCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCH TTLPKEIEHLKNLRRLVLKGNNFSPQEKERIRNLLLEYEIDGELLRRRRRRGWSW HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10792715; 11823852 [H]