Click here to switch to the map view.

The map label for this gene is yocS [H]

Identifier: 116327619

GI number: 116327619

Start: 988489

End: 989355

Strand: Reverse

Name: yocS [H]

Synonym: LBL_0851

Alternate gene names: 116327619

Gene position: 989355-988489 (Counterclockwise)

Preceding gene: 116327622

Following gene: 116327618

Centisome position: 27.37

GC content: 44.06

Gene sequence:

>867_bases
ATGGAATCCAATTTACTGACAAAGATATTTCTTCCGGTCGCGTTAGGTATCATTATGCTCGGAATGGGAATGACACTCAC
CTTAGCCGACTTTAAACGAATCTTCGTCCTTCCCAAAGCGGCGCTCACGGGATTAACATTGCAACTTCTGCTTTTGCCAA
TCACAGGATGGCTGATCGCAAGCATATCCGGGCTTTCGGGAGAGCTTTCCGTAGGTCTGATTCTTTTAGCGATCTGCCCG
GGAGGAGCGACTTCCAATCTTATCACTCATCTTGCAAAAGGAGACGTTGCCCTTTCCATAACGTTAACCGCAATAACAAG
TTGCATAACCGTTCTTTCGATCCCATTTCTTTTAAATATGTCCATGCACCATTTTCTCGGATCTGGACAAATGATCGAAC
TCAACATTCCTCAAACGATTCTCCAAATCTTTCTAATCACAGTATTACCGGTCTCGATCGGAATGATTCTCAACGCGAAA
AAACCGGAATTTTCCCAAAAGTTCGAAAAAACGATAAAAGTTCTTTCCGGAATTTTTCTGATCCTAATCATCGCAGGCGC
CATTGTCCGCGAAAGGCAAAATATCGTACCATTTTTCATCCAGGTGGGTCCCGCTTCCTTGGCACTCAATCTAATTACCA
TGTTATTAGGTTATTTGGGAGCGACTCTGATGAAGGTCACACATTCCCAAAGAACTTCTATCACGATCGAAGTGGGAATT
CAGAACGGAACCTTAGGAATCGCGATCGCAAGTACAATCCTAAACAATCCGGCAATGGCGATTCCGTCCGCAATCTACAG
TTTGATTATGTTTGCCACGGGAGGACCATTTTCGATCTGGACGAATAGAATCCCGAATCAAACTTAG

Upstream 100 bases:

>100_bases
CAAGAAAACCTGAAATATAAAATTTAAGGAATTCAAAAATTCTGCGGACTTTAAGTAATAACTTTTGTACAGAGTTTGAA
ACAAAAATAGGTCTTAAACA

Downstream 100 bases:

>100_bases
ACAAAATGGCGCCCCTTCTGGGCTTGAAAAGCGTGGGTTAGATGCGAGCATTTACCACAAAACAAGAAAACCAACAGAAG
GAACGCAATGAAAAGAAAAG

Product: Sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MESNLLTKIFLPVALGIIMLGMGMTLTLADFKRIFVLPKAALTGLTLQLLLLPITGWLIASISGLSGELSVGLILLAICP
GGATSNLITHLAKGDVALSITLTAITSCITVLSIPFLLNMSMHHFLGSGQMIELNIPQTILQIFLITVLPVSIGMILNAK
KPEFSQKFEKTIKVLSGIFLILIIAGAIVRERQNIVPFFIQVGPASLALNLITMLLGYLGATLMKVTHSQRTSITIEVGI
QNGTLGIAIASTILNNPAMAIPSAIYSLIMFATGGPFSIWTNRIPNQT

Sequences:

>Translated_288_residues
MESNLLTKIFLPVALGIIMLGMGMTLTLADFKRIFVLPKAALTGLTLQLLLLPITGWLIASISGLSGELSVGLILLAICP
GGATSNLITHLAKGDVALSITLTAITSCITVLSIPFLLNMSMHHFLGSGQMIELNIPQTILQIFLITVLPVSIGMILNAK
KPEFSQKFEKTIKVLSGIFLILIIAGAIVRERQNIVPFFIQVGPASLALNLITMLLGYLGATLMKVTHSQRTSITIEVGI
QNGTLGIAIASTILNNPAMAIPSAIYSLIMFATGGPFSIWTNRIPNQT
>Mature_288_residues
MESNLLTKIFLPVALGIIMLGMGMTLTLADFKRIFVLPKAALTGLTLQLLLLPITGWLIASISGLSGELSVGLILLAICP
GGATSNLITHLAKGDVALSITLTAITSCITVLSIPFLLNMSMHHFLGSGQMIELNIPQTILQIFLITVLPVSIGMILNAK
KPEFSQKFEKTIKVLSGIFLILIIAGAIVRERQNIVPFFIQVGPASLALNLITMLLGYLGATLMKVTHSQRTSITIEVGI
QNGTLGIAIASTILNNPAMAIPSAIYSLIMFATGGPFSIWTNRIPNQT

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI215422368, Length=235, Percent_Identity=31.4893617021277, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI215422370, Length=239, Percent_Identity=30.1255230125523, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI9790143, Length=239, Percent_Identity=30.1255230125523, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4506973, Length=242, Percent_Identity=25.6198347107438, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4506971, Length=263, Percent_Identity=26.2357414448669, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 30703; Mature: 30703

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNLLTKIFLPVALGIIMLGMGMTLTLADFKRIFVLPKAALTGLTLQLLLLPITGWLIA
CCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISGLSGELSVGLILLAICPGGATSNLITHLAKGDVALSITLTAITSCITVLSIPFLLNM
HHCCCCCCHHHHEEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH
SMHHFLGSGQMIELNIPQTILQIFLITVLPVSIGMILNAKKPEFSQKFEKTIKVLSGIFL
HHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ILIIAGAIVRERQNIVPFFIQVGPASLALNLITMLLGYLGATLMKVTHSQRTSITIEVGI
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
QNGTLGIAIASTILNNPAMAIPSAIYSLIMFATGGPFSIWTNRIPNQT
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MESNLLTKIFLPVALGIIMLGMGMTLTLADFKRIFVLPKAALTGLTLQLLLLPITGWLIA
CCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISGLSGELSVGLILLAICPGGATSNLITHLAKGDVALSITLTAITSCITVLSIPFLLNM
HHCCCCCCHHHHEEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH
SMHHFLGSGQMIELNIPQTILQIFLITVLPVSIGMILNAKKPEFSQKFEKTIKVLSGIFL
HHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ILIIAGAIVRERQNIVPFFIQVGPASLALNLITMLLGYLGATLMKVTHSQRTSITIEVGI
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
QNGTLGIAIASTILNNPAMAIPSAIYSLIMFATGGPFSIWTNRIPNQT
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]