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The map label for this gene is ynbA [H]

Identifier: 116327044

GI number: 116327044

Start: 260385

End: 261950

Strand: Direct

Name: ynbA [H]

Synonym: LBL_0217

Alternate gene names: 116327044

Gene position: 260385-261950 (Clockwise)

Preceding gene: 116327042

Following gene: 116327047

Centisome position: 7.2

GC content: 41.06

Gene sequence:

>1566_bases
GTGCTGGTTGGTTCCGATAATTCGATTGAGATTCCTTTTTTGGATAGACTTCGCACTTCCGAAGCGAGGCTTCGAGGTCT
TAGATTAGTTCATACTCATTTAAAGGGAGAATCTTTAAACCAAGAGGATTTAACCGATTTGGCCTTGTTGCGCTTAGACT
ATATGACCGCTGTGGTCATGGATACTTCCGGAAATCCGAACGGCTATTATTCCGCGCATCTGAATCCAGAATCAGACGAC
CTCTGGAGTGTTCTTCCCAAAAAATATCCCGGACAATTGACCGAAGGAATTCTTGAGGAAATTTTAGAAATAGAATCCAG
ACTTTCCCGTTCGAAAAAAAATCTAAAAGACGCTCAAAAGGAAAATCGCGCTTTTTTGGTGGGAGTTTATCCTGAAAGAA
GTGTGGGTAGACATCCTTCTTTGTCTATGGAAGAATTGAAGGAACTTTGTAGAACAGCGGAAGTTCATGTCGTGGATACC
TTCATACAGAGAAAGAACCGCCTCGATCCTTCGACGGTTTTGGGAAAGGGAAAACTCGAAGAGATTATTTTGAAAGCGAT
TCAGAAGCACGTGGAACTTCTCGTATTCGATCTTGAACTTACACCTTCTCAAGCAAAAAAGATCTCGGATATCGCGGACA
TCAAAGTAATCGATAGAACGCAGCTCATTCTCGATATTTTTGCAAGAAATGCGAAGAGCAGAGACGGTAAACTTCAAGTG
GAATTAGCTCAACTTAAATATCTCAAAGGACGGCTCACGGAATTAGACGATAACATGTCTAGATTGACCGGTGGAATCGG
AGGAAGGGGACCCGGGGAAACAAAACTTGAAATTGGAAAACGAAGAGTCGAGGAACGAATTACGAGACTCGAAGTTGAAC
TCAAGTCTCTCAAAAAACGAAGAGAAATTAATCGAAGGCAAAGAAAAAGAAACGAGTTACCCGCTGTCGGCATTGTCGGT
TATACGAATGCGGGAAAATCCACGTTCTTAAACGCCTTGACAAACAGCGAGATTCTTTCCGAAAACAAACTTTTTGCTAC
ACTTGATCCTACCACAAGAAGAATTCGTTTTCCAGAAGAAAGAGAAATTATTATTTCCGATACGGTCGGATTTATTCACG
ACCTTCCACCCGAGCTTTCCAATGCGTTTAAGGCGACTTTGGAAGAATTGGGAGACTCCGATCTTTTGGTGCACGTTGTG
GATGTTTCTAATCCGGATTATAAACTTCAGATGGAGGCTGTTGAAAAAATTCTAGAAGAATTAGAACTTTCTCATATACC
GATGATTCAAGTGTTTAACAAAATTGATAATCTCGAAAAGTTCAAAACTTGGAAGATTGAAAGCGATTCTAACGGTTATA
AAACTTTTTCCCATCCTTCCATAAATCATGGCCCTGGGTTAGAAGCGATCGCAGACTTGAAGGAGGAGTTGGGTATCGAC
GTTCACTCGGATACGGTTTTAGTTTCTGCCTATCAAGGTTGGGGATTAAAAGCGTTTCTGGATCTTTTGGAAGAAAAAAT
CTACAATTTGCCCCGATTGAACTATTCTATTGCAGAAAAATTGTGA

Upstream 100 bases:

>100_bases
GATCGTTAGTCAAGATTTTGCGCGCACACTCTGCGAATTATCCTTAGAAATCGGCAAACAAATCGGGATTCTAATCGATC
GATCCGGCTACGTTACCCAT

Downstream 100 bases:

>100_bases
GGGTCGACCTTTCTGATTCGGAATACTCGTTTTGCCTGGAATATTTTCGCTCGGAATAAATTTGGTGTGGTCCGCTTTTC
TTCAGTACGCCGAGCTCACG

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MLVGSDNSIEIPFLDRLRTSEARLRGLRLVHTHLKGESLNQEDLTDLALLRLDYMTAVVMDTSGNPNGYYSAHLNPESDD
LWSVLPKKYPGQLTEGILEEILEIESRLSRSKKNLKDAQKENRAFLVGVYPERSVGRHPSLSMEELKELCRTAEVHVVDT
FIQRKNRLDPSTVLGKGKLEEIILKAIQKHVELLVFDLELTPSQAKKISDIADIKVIDRTQLILDIFARNAKSRDGKLQV
ELAQLKYLKGRLTELDDNMSRLTGGIGGRGPGETKLEIGKRRVEERITRLEVELKSLKKRREINRRQRKRNELPAVGIVG
YTNAGKSTFLNALTNSEILSENKLFATLDPTTRRIRFPEEREIIISDTVGFIHDLPPELSNAFKATLEELGDSDLLVHVV
DVSNPDYKLQMEAVEKILEELELSHIPMIQVFNKIDNLEKFKTWKIESDSNGYKTFSHPSINHGPGLEAIADLKEELGID
VHSDTVLVSAYQGWGLKAFLDLLEEKIYNLPRLNYSIAEKL

Sequences:

>Translated_521_residues
MLVGSDNSIEIPFLDRLRTSEARLRGLRLVHTHLKGESLNQEDLTDLALLRLDYMTAVVMDTSGNPNGYYSAHLNPESDD
LWSVLPKKYPGQLTEGILEEILEIESRLSRSKKNLKDAQKENRAFLVGVYPERSVGRHPSLSMEELKELCRTAEVHVVDT
FIQRKNRLDPSTVLGKGKLEEIILKAIQKHVELLVFDLELTPSQAKKISDIADIKVIDRTQLILDIFARNAKSRDGKLQV
ELAQLKYLKGRLTELDDNMSRLTGGIGGRGPGETKLEIGKRRVEERITRLEVELKSLKKRREINRRQRKRNELPAVGIVG
YTNAGKSTFLNALTNSEILSENKLFATLDPTTRRIRFPEEREIIISDTVGFIHDLPPELSNAFKATLEELGDSDLLVHVV
DVSNPDYKLQMEAVEKILEELELSHIPMIQVFNKIDNLEKFKTWKIESDSNGYKTFSHPSINHGPGLEAIADLKEELGID
VHSDTVLVSAYQGWGLKAFLDLLEEKIYNLPRLNYSIAEKL
>Mature_521_residues
MLVGSDNSIEIPFLDRLRTSEARLRGLRLVHTHLKGESLNQEDLTDLALLRLDYMTAVVMDTSGNPNGYYSAHLNPESDD
LWSVLPKKYPGQLTEGILEEILEIESRLSRSKKNLKDAQKENRAFLVGVYPERSVGRHPSLSMEELKELCRTAEVHVVDT
FIQRKNRLDPSTVLGKGKLEEIILKAIQKHVELLVFDLELTPSQAKKISDIADIKVIDRTQLILDIFARNAKSRDGKLQV
ELAQLKYLKGRLTELDDNMSRLTGGIGGRGPGETKLEIGKRRVEERITRLEVELKSLKKRREINRRQRKRNELPAVGIVG
YTNAGKSTFLNALTNSEILSENKLFATLDPTTRRIRFPEEREIIISDTVGFIHDLPPELSNAFKATLEELGDSDLLVHVV
DVSNPDYKLQMEAVEKILEELELSHIPMIQVFNKIDNLEKFKTWKIESDSNGYKTFSHPSINHGPGLEAIADLKEELGID
VHSDTVLVSAYQGWGLKAFLDLLEEKIYNLPRLNYSIAEKL

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=189, Percent_Identity=38.0952380952381, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI310133118, Length=193, Percent_Identity=37.8238341968912, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI310124269, Length=171, Percent_Identity=39.766081871345, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI310124267, Length=171, Percent_Identity=39.766081871345, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI310124171, Length=171, Percent_Identity=39.766081871345, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI310124169, Length=171, Percent_Identity=39.766081871345, Blast_Score=127, Evalue=2e-29,
Organism=Escherichia coli, GI1790615, Length=352, Percent_Identity=38.9204545454545, Blast_Score=244, Evalue=7e-66,
Organism=Caenorhabditis elegans, GI17561038, Length=322, Percent_Identity=29.1925465838509, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24650079, Length=321, Percent_Identity=32.7102803738318, Blast_Score=121, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 59115; Mature: 59115

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGSDNSIEIPFLDRLRTSEARLRGLRLVHTHLKGESLNQEDLTDLALLRLDYMTAVVM
CEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEE
DTSGNPNGYYSAHLNPESDDLWSVLPKKYPGQLTEGILEEILEIESRLSRSKKNLKDAQK
ECCCCCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENRAFLVGVYPERSVGRHPSLSMEELKELCRTAEVHVVDTFIQRKNRLDPSTVLGKGKLE
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHH
EIILKAIQKHVELLVFDLELTPSQAKKISDIADIKVIDRTQLILDIFARNAKSRDGKLQV
HHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCEEEE
ELAQLKYLKGRLTELDDNMSRLTGGIGGRGPGETKLEIGKRRVEERITRLEVELKSLKKR
EHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
REINRRQRKRNELPAVGIVGYTNAGKSTFLNALTNSEILSENKLFATLDPTTRRIRFPEE
HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCEEEEECCCHHCCCCCCC
REIIISDTVGFIHDLPPELSNAFKATLEELGDSDLLVHVVDVSNPDYKLQMEAVEKILEE
CCEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHH
LELSHIPMIQVFNKIDNLEKFKTWKIESDSNGYKTFSHPSINHGPGLEAIADLKEELGID
HHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCE
VHSDTVLVSAYQGWGLKAFLDLLEEKIYNLPRLNYSIAEKL
ECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MLVGSDNSIEIPFLDRLRTSEARLRGLRLVHTHLKGESLNQEDLTDLALLRLDYMTAVVM
CEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEE
DTSGNPNGYYSAHLNPESDDLWSVLPKKYPGQLTEGILEEILEIESRLSRSKKNLKDAQK
ECCCCCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENRAFLVGVYPERSVGRHPSLSMEELKELCRTAEVHVVDTFIQRKNRLDPSTVLGKGKLE
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHH
EIILKAIQKHVELLVFDLELTPSQAKKISDIADIKVIDRTQLILDIFARNAKSRDGKLQV
HHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCEEEE
ELAQLKYLKGRLTELDDNMSRLTGGIGGRGPGETKLEIGKRRVEERITRLEVELKSLKKR
EHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
REINRRQRKRNELPAVGIVGYTNAGKSTFLNALTNSEILSENKLFATLDPTTRRIRFPEE
HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCEEEEECCCHHCCCCCCC
REIIISDTVGFIHDLPPELSNAFKATLEELGDSDLLVHVVDVSNPDYKLQMEAVEKILEE
CCEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHH
LELSHIPMIQVFNKIDNLEKFKTWKIESDSNGYKTFSHPSINHGPGLEAIADLKEELGID
HHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCE
VHSDTVLVSAYQGWGLKAFLDLLEEKIYNLPRLNYSIAEKL
ECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]