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The map label for this gene is ydiF [H]

Identifier: 116327034

GI number: 116327034

Start: 245823

End: 247766

Strand: Direct

Name: ydiF [H]

Synonym: LBL_0207

Alternate gene names: 116327034

Gene position: 245823-247766 (Clockwise)

Preceding gene: 116327033

Following gene: 116327035

Centisome position: 6.8

GC content: 39.56

Gene sequence:

>1944_bases
TTGCTTCAATTTATCGATATAAAACATCAATATGCTTCGGCCGTATTGTTTAACGGATTTTCCTGGCATATAAAACCCGG
CTTTCGTGTTTGTCTTGTTGGTCCAAATGGTTCCGGCAAATCGACTTTATTTAGGATTGCAGAAGGAAAATTTATTCCAG
ACAATGGAACCGTAGCAAAATCAAAAAATACCGAAATTTCAGTTTTTCAACAGATACCGGACTTTGATCCGGAGACTTCG
GTTATAGACACTGTATTAGACAAACATAAACATTATCGCGAGTATTCGGAACGATTGAAAGAAATCAATTGTAAGTTCGA
TCTTGTTTCCCACGATTCGGAAGAATTCACAGCGATCCTCGATGAACAAAGCGCTCTGGAAGAATACGCTTTTACGTACG
GAATTCATAAGTTAGAATCCAATGCCCGAAAGGTTTTGGGGGGATTAGGGTTTTCTAATGCTCAGATGGAAATGAAGGTT
CGTGAATTCTCTCCCGGTTATCAACACCGTCTTGGTTTGGCGATCACTCTTCTGAATCCAGGAAACTTACTTTTGTTGGA
CGAACCTACGAACCATTTGGATAATGCATCTAAGGAATGGCTTACAGGTTATCTGAATTCCACCGGGCAATCCTTTGTGC
TTGTGACTCACGATCCCGAATTTTTGAATGCGACCTGCGATACAATCGCAGAACTTTCCCCTTCCGGAGTCATCGAATTT
CGGGGGACTTTGGAAGAATATTTCGAACACAAAAATGAATTTCAGGAAAAGCTCCAAGCCCAATTCGAAAAGGAGGAAGC
TTACCTTAAAAATAGGATGGAATGGATAGAGCGATTTCGTGCGAAGGCTACGAAGGCAAGGCAGGTCCAATCTGCGATCA
AAAAACTTGAAAAAAGAGACAAAGTTGAAGCGCCTCAGGAATCTTTCTGGAATTCCAAGTCCGATTATCGTTTTAATTTT
ATTTCTTCGGGAAAAATTACCGTAAGAATCGAAAACGGAACCTTTTCGTATTCCGGTAAGGCTCCTTATATTTTCAACAA
CGCTGATTTGGAAATCTCTGCGGGAGATAAAATTGCAGTTGTCGGTCCGAATGGGGCTGGAAAGTCTACGTTTCTTCGTT
GTTTATTAGAAATTCATAAACTAGTTTCGGGGAAAATTTATTACGGACCGAAAACGAAAATCGGTTACTTTTCGCAAAAT
CATCACGAAGAACTGGATCCTTCCAAAAATCTGCTTCAAACCGTTATGTCTGCTTATCCTGATCTTACGGAACAACAAGC
TAGAAGCCTTCTCGGTTATTTTTCTTTTTCAGATGATTCCGTTTATAAACAAACCAATCTTCTTTCGGGCGGAGAACAAA
GTCGCCTTCGTCTTGCGATGCTCGTCCGTTTTCCGGCCAATGCCATTTTTTTGGACGAACCTACAAACCATCTGGATTTA
GTCGTTCGGGATAATTTACGCCGAGCACTGATGGCTTATGAAGGTTCCCTTTTGATCATTTCTCATGATCCGGAATTTTT
AAAAGATCTCTGTAATCGTACCATTTCGGTCGATAACGGGCATATCCGTGATTTCAATTGTACTTTCTCCGACTATTTGA
ATTACAATTTGCAAGAGACAGTACATCCTAAATTACAAAGCCACAATTCTACCTTGAAAAAAGGGGAGACAAACCAAACC
CGTTCTAAGAAAAATTCCGACAAAAATCGAATCAAAAAAATTCAGAAAGAATTAGAGCAGATAGAAACCAAAATCGAACT
TTTGGAAAAATCCAAAAAGAATTTGGAAGAAGTGCTGGCTGATCCGGACTTTTTTAAAAATCGTAGTTATCAATTGGAGC
TAGACAACTTAAACGAAGTTAAAAATGAGATCACACGTTTGACGTCTGCGTGGGAATCGCTTCAATTTGAGTTGGAAGAT
CTTTTAGAAAAGTCTAAATTGTAA

Upstream 100 bases:

>100_bases
AAGATTGGAAGAACTTGCGGCAAAAGGTAAGAAGTAATTCCCTTTTTTAATCCGACGGATTTGGCCTGCGTCGTTTTTAC
CTCTTTGAACTTCTCGATCC

Downstream 100 bases:

>100_bases
TTTGGTTGGAATTATGAATTCGAATTACTTGAATTTTAACTCCGATTGGTTGAAAAGAAACAGCTGATTCAGCAAATACC
GCGTTTTATTTTTTATATTG

Product: ATP-binding protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MLQFIDIKHQYASAVLFNGFSWHIKPGFRVCLVGPNGSGKSTLFRIAEGKFIPDNGTVAKSKNTEISVFQQIPDFDPETS
VIDTVLDKHKHYREYSERLKEINCKFDLVSHDSEEFTAILDEQSALEEYAFTYGIHKLESNARKVLGGLGFSNAQMEMKV
REFSPGYQHRLGLAITLLNPGNLLLLDEPTNHLDNASKEWLTGYLNSTGQSFVLVTHDPEFLNATCDTIAELSPSGVIEF
RGTLEEYFEHKNEFQEKLQAQFEKEEAYLKNRMEWIERFRAKATKARQVQSAIKKLEKRDKVEAPQESFWNSKSDYRFNF
ISSGKITVRIENGTFSYSGKAPYIFNNADLEISAGDKIAVVGPNGAGKSTFLRCLLEIHKLVSGKIYYGPKTKIGYFSQN
HHEELDPSKNLLQTVMSAYPDLTEQQARSLLGYFSFSDDSVYKQTNLLSGGEQSRLRLAMLVRFPANAIFLDEPTNHLDL
VVRDNLRRALMAYEGSLLIISHDPEFLKDLCNRTISVDNGHIRDFNCTFSDYLNYNLQETVHPKLQSHNSTLKKGETNQT
RSKKNSDKNRIKKIQKELEQIETKIELLEKSKKNLEEVLADPDFFKNRSYQLELDNLNEVKNEITRLTSAWESLQFELED
LLEKSKL

Sequences:

>Translated_647_residues
MLQFIDIKHQYASAVLFNGFSWHIKPGFRVCLVGPNGSGKSTLFRIAEGKFIPDNGTVAKSKNTEISVFQQIPDFDPETS
VIDTVLDKHKHYREYSERLKEINCKFDLVSHDSEEFTAILDEQSALEEYAFTYGIHKLESNARKVLGGLGFSNAQMEMKV
REFSPGYQHRLGLAITLLNPGNLLLLDEPTNHLDNASKEWLTGYLNSTGQSFVLVTHDPEFLNATCDTIAELSPSGVIEF
RGTLEEYFEHKNEFQEKLQAQFEKEEAYLKNRMEWIERFRAKATKARQVQSAIKKLEKRDKVEAPQESFWNSKSDYRFNF
ISSGKITVRIENGTFSYSGKAPYIFNNADLEISAGDKIAVVGPNGAGKSTFLRCLLEIHKLVSGKIYYGPKTKIGYFSQN
HHEELDPSKNLLQTVMSAYPDLTEQQARSLLGYFSFSDDSVYKQTNLLSGGEQSRLRLAMLVRFPANAIFLDEPTNHLDL
VVRDNLRRALMAYEGSLLIISHDPEFLKDLCNRTISVDNGHIRDFNCTFSDYLNYNLQETVHPKLQSHNSTLKKGETNQT
RSKKNSDKNRIKKIQKELEQIETKIELLEKSKKNLEEVLADPDFFKNRSYQLELDNLNEVKNEITRLTSAWESLQFELED
LLEKSKL
>Mature_647_residues
MLQFIDIKHQYASAVLFNGFSWHIKPGFRVCLVGPNGSGKSTLFRIAEGKFIPDNGTVAKSKNTEISVFQQIPDFDPETS
VIDTVLDKHKHYREYSERLKEINCKFDLVSHDSEEFTAILDEQSALEEYAFTYGIHKLESNARKVLGGLGFSNAQMEMKV
REFSPGYQHRLGLAITLLNPGNLLLLDEPTNHLDNASKEWLTGYLNSTGQSFVLVTHDPEFLNATCDTIAELSPSGVIEF
RGTLEEYFEHKNEFQEKLQAQFEKEEAYLKNRMEWIERFRAKATKARQVQSAIKKLEKRDKVEAPQESFWNSKSDYRFNF
ISSGKITVRIENGTFSYSGKAPYIFNNADLEISAGDKIAVVGPNGAGKSTFLRCLLEIHKLVSGKIYYGPKTKIGYFSQN
HHEELDPSKNLLQTVMSAYPDLTEQQARSLLGYFSFSDDSVYKQTNLLSGGEQSRLRLAMLVRFPANAIFLDEPTNHLDL
VVRDNLRRALMAYEGSLLIISHDPEFLKDLCNRTISVDNGHIRDFNCTFSDYLNYNLQETVHPKLQSHNSTLKKGETNQT
RSKKNSDKNRIKKIQKELEQIETKIELLEKSKKNLEEVLADPDFFKNRSYQLELDNLNEVKNEITRLTSAWESLQFELED
LLEKSKL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=522, Percent_Identity=30.6513409961686, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI27881506, Length=510, Percent_Identity=30.1960784313725, Blast_Score=209, Evalue=1e-53,
Organism=Homo sapiens, GI10947137, Length=510, Percent_Identity=30.1960784313725, Blast_Score=208, Evalue=1e-53,
Organism=Homo sapiens, GI10947135, Length=529, Percent_Identity=28.9224952741021, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI69354671, Length=529, Percent_Identity=28.9224952741021, Blast_Score=177, Evalue=3e-44,
Organism=Escherichia coli, GI1789751, Length=653, Percent_Identity=30.6278713629403, Blast_Score=295, Evalue=9e-81,
Organism=Escherichia coli, GI1787041, Length=540, Percent_Identity=30.5555555555556, Blast_Score=256, Evalue=4e-69,
Organism=Escherichia coli, GI1787182, Length=635, Percent_Identity=28.8188976377953, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI2367384, Length=551, Percent_Identity=27.7676950998185, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI1787029, Length=204, Percent_Identity=27.9411764705882, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789891, Length=253, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788225, Length=210, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1786975, Length=393, Percent_Identity=25.9541984732824, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=27.1111111111111, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787105, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788506, Length=205, Percent_Identity=24.390243902439, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=509, Percent_Identity=30.6483300589391, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17555318, Length=526, Percent_Identity=27.9467680608365, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17559834, Length=541, Percent_Identity=27.9112754158965, Blast_Score=189, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6321121, Length=532, Percent_Identity=29.6992481203008, Blast_Score=233, Evalue=7e-62,
Organism=Saccharomyces cerevisiae, GI6320874, Length=524, Percent_Identity=26.9083969465649, Blast_Score=187, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6324314, Length=400, Percent_Identity=26, Blast_Score=132, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=404, Percent_Identity=25.7425742574257, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=411, Percent_Identity=26.7639902676399, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24666836, Length=529, Percent_Identity=31.1909262759924, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24642252, Length=486, Percent_Identity=30.4526748971193, Blast_Score=208, Evalue=9e-54,
Organism=Drosophila melanogaster, GI18859989, Length=486, Percent_Identity=30.4526748971193, Blast_Score=208, Evalue=9e-54,
Organism=Drosophila melanogaster, GI24641342, Length=532, Percent_Identity=29.3233082706767, Blast_Score=206, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74110; Mature: 74110

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFIDIKHQYASAVLFNGFSWHIKPGFRVCLVGPNGSGKSTLFRIAEGKFIPDNGTVAK
CCEEEECHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCEEEEECCCEECCCCCEEC
SKNTEISVFQQIPDFDPETSVIDTVLDKHKHYREYSERLKEINCKFDLVSHDSEEFTAIL
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
DEQSALEEYAFTYGIHKLESNARKVLGGLGFSNAQMEMKVREFSPGYQHRLGLAITLLNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEECEEEEEEECC
GNLLLLDEPTNHLDNASKEWLTGYLNSTGQSFVLVTHDPEFLNATCDTIAELSPSGVIEF
CCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
RGTLEEYFEHKNEFQEKLQAQFEKEEAYLKNRMEWIERFRAKATKARQVQSAIKKLEKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVEAPQESFWNSKSDYRFNFISSGKITVRIENGTFSYSGKAPYIFNNADLEISAGDKIAV
CCCCCHHHHCCCCCCEEEEEEECCEEEEEEECCEEEECCCCCEEECCCCEEEECCCEEEE
VGPNGAGKSTFLRCLLEIHKLVSGKIYYGPKTKIGYFSQNHHEELDPSKNLLQTVMSAYP
ECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHCC
DLTEQQARSLLGYFSFSDDSVYKQTNLLSGGEQSRLRLAMLVRFPANAIFLDEPTNHLDL
CHHHHHHHHHHHHEECCCCCHHHHHHCCCCCCHHHHEEEEEEECCCCEEEECCCCCCEEE
VVRDNLRRALMAYEGSLLIISHDPEFLKDLCNRTISVDNGHIRDFNCTFSDYLNYNLQET
EEHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCEECCCCEEEEECCCHHHHCCCCCHHH
VHPKLQSHNSTLKKGETNQTRSKKNSDKNRIKKIQKELEQIETKIELLEKSKKNLEEVLA
HCHHHHCCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPDFFKNRSYQLELDNLNEVKNEITRLTSAWESLQFELEDLLEKSKL
CCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQFIDIKHQYASAVLFNGFSWHIKPGFRVCLVGPNGSGKSTLFRIAEGKFIPDNGTVAK
CCEEEECHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCEEEEECCCEECCCCCEEC
SKNTEISVFQQIPDFDPETSVIDTVLDKHKHYREYSERLKEINCKFDLVSHDSEEFTAIL
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
DEQSALEEYAFTYGIHKLESNARKVLGGLGFSNAQMEMKVREFSPGYQHRLGLAITLLNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEECEEEEEEECC
GNLLLLDEPTNHLDNASKEWLTGYLNSTGQSFVLVTHDPEFLNATCDTIAELSPSGVIEF
CCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
RGTLEEYFEHKNEFQEKLQAQFEKEEAYLKNRMEWIERFRAKATKARQVQSAIKKLEKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVEAPQESFWNSKSDYRFNFISSGKITVRIENGTFSYSGKAPYIFNNADLEISAGDKIAV
CCCCCHHHHCCCCCCEEEEEEECCEEEEEEECCEEEECCCCCEEECCCCEEEECCCEEEE
VGPNGAGKSTFLRCLLEIHKLVSGKIYYGPKTKIGYFSQNHHEELDPSKNLLQTVMSAYP
ECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHCC
DLTEQQARSLLGYFSFSDDSVYKQTNLLSGGEQSRLRLAMLVRFPANAIFLDEPTNHLDL
CHHHHHHHHHHHHEECCCCCHHHHHHCCCCCCHHHHEEEEEEECCCCEEEECCCCCCEEE
VVRDNLRRALMAYEGSLLIISHDPEFLKDLCNRTISVDNGHIRDFNCTFSDYLNYNLQET
EEHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCEECCCCEEEEECCCHHHHCCCCCHHH
VHPKLQSHNSTLKKGETNQTRSKKNSDKNRIKKIQKELEQIETKIELLEKSKKNLEEVLA
HCHHHHCCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPDFFKNRSYQLELDNLNEVKNEITRLTSAWESLQFELEDLLEKSKL
CCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]