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The map label for this gene is fecI [C]

Identifier: 116327030

GI number: 116327030

Start: 242189

End: 242737

Strand: Direct

Name: fecI [C]

Synonym: LBL_0203

Alternate gene names: 116327030

Gene position: 242189-242737 (Clockwise)

Preceding gene: 116327029

Following gene: 116327031

Centisome position: 6.7

GC content: 35.34

Gene sequence:

>549_bases
GTGGCACACACTTCCGAGTTAAAAAAACTCTATAACCACAATAAAGATGATTTATTTCATTATATAAAAAAATCGTTCTA
CGACGAAAATTCTGCGCAAGATATTCTGCACGATTCGTTTCTAAATTTTTTTCGATATTATGAAGATAAAAGTATCCCTG
ATCCGACTTCTTGTAGGATGATTCTTTTTAGAATCGCGAGAAATTTAATGATTAACCATGCGAAGTCCTATTATCAGCGG
AATGTATCCTTGGTAGGTGAAGATGCGAGCAGTAATTTTACGTCTAAAACGCCAAGTCCTGAATTTTCCGTGTTGGAAAA
AATTGACCAATCGGATGTTAAAAACATCATCGATTCTCTTTTAGATATAATTTCCCCGGAATACAAAGAGGTTTTACTTT
TGCGATATCAGCAGGACTTAAAGCTAGAAGAGATTTCTAAAATCCTTGGGATAAGTATATCGGGTGTATCTAGACTCATT
GAAAGGGCCGAAAAAGCTTTGGCTCAAGAAGGTAAAAAGATAGGTTTCCAACCTGGAAATTACCTATAG

Upstream 100 bases:

>100_bases
TTATGATTCTTAATCGCGAAACTTTAGAATCTATATTTTTATACAACAAATTATCTTTTTGCTTGAAAAAACAAGTACGA
ATCAGCGACCCTTCATTACT

Downstream 100 bases:

>100_bases
AATATTTTTTATTACGTCTTATATTTTAAAAAGAAAGATTCGGGACCGTTGGTGATAAAAAAAATCGGAAATGAAAAAAA
AGCTCAAATTGGTTTCTTTT

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MAHTSELKKLYNHNKDDLFHYIKKSFYDENSAQDILHDSFLNFFRYYEDKSIPDPTSCRMILFRIARNLMINHAKSYYQR
NVSLVGEDASSNFTSKTPSPEFSVLEKIDQSDVKNIIDSLLDIISPEYKEVLLLRYQQDLKLEEISKILGISISGVSRLI
ERAEKALAQEGKKIGFQPGNYL

Sequences:

>Translated_182_residues
MAHTSELKKLYNHNKDDLFHYIKKSFYDENSAQDILHDSFLNFFRYYEDKSIPDPTSCRMILFRIARNLMINHAKSYYQR
NVSLVGEDASSNFTSKTPSPEFSVLEKIDQSDVKNIIDSLLDIISPEYKEVLLLRYQQDLKLEEISKILGISISGVSRLI
ERAEKALAQEGKKIGFQPGNYL
>Mature_181_residues
AHTSELKKLYNHNKDDLFHYIKKSFYDENSAQDILHDSFLNFFRYYEDKSIPDPTSCRMILFRIARNLMINHAKSYYQRN
VSLVGEDASSNFTSKTPSPEFSVLEKIDQSDVKNIIDSLLDIISPEYKEVLLLRYQQDLKLEEISKILGISISGVSRLIE
RAEKALAQEGKKIGFQPGNYL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21091; Mature: 20960

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTSELKKLYNHNKDDLFHYIKKSFYDENSAQDILHDSFLNFFRYYEDKSIPDPTSCRM
CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ILFRIARNLMINHAKSYYQRNVSLVGEDASSNFTSKTPSPEFSVLEKIDQSDVKNIIDSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LDIISPEYKEVLLLRYQQDLKLEEISKILGISISGVSRLIERAEKALAQEGKKIGFQPGN
HHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCC
YL
CC
>Mature Secondary Structure 
AHTSELKKLYNHNKDDLFHYIKKSFYDENSAQDILHDSFLNFFRYYEDKSIPDPTSCRM
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ILFRIARNLMINHAKSYYQRNVSLVGEDASSNFTSKTPSPEFSVLEKIDQSDVKNIIDSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LDIISPEYKEVLLLRYQQDLKLEEISKILGISISGVSRLIERAEKALAQEGKKIGFQPGN
HHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCC
YL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA