Click here to switch to the map view.

The map label for this gene is ybiT [H]

Identifier: 116327024

GI number: 116327024

Start: 230701

End: 232335

Strand: Reverse

Name: ybiT [H]

Synonym: LBL_0197

Alternate gene names: 116327024

Gene position: 232335-230701 (Counterclockwise)

Preceding gene: 116327026

Following gene: 116327021

Centisome position: 6.43

GC content: 43.24

Gene sequence:

>1635_bases
ATGATCAGCACTTCCGGATTGACCCTAAACTTTGGTAAAAAAGTTCTTTTTGAGAACGTTACGGTGAAGTTTAAGGAAAA
TTGCAGATACGGACTGATTGGAGCGAACGGTTCCGGTAAGTCGACGTTTATGAAAATTCTAGCGGGAATAGAACAAAGCG
CCAGCGGTTCCGTTTCGATCGATGCGGGAATAAAAGTCGGTTACTTAAAACAGGATCACTTCGAATATGAAAACGAAACC
GTACTCAATACGGTCATCATGGGAAACAAGGAACTTTGGGAAGTTTCTCAAGAAAGGGACGCAATTTACTCAAAACCTGA
AATGTCGGATGAAGACGGAATGCGAGTTTCCGAACTCGAAGAAAAATACGGAGAACTCGGAGGCTACGAGGCGGAAAGTA
CTGCGGGAGAACTTTTGGAAGGATTAGGAATCCCTACCACGAGTCATACTCAAACTCTTGCGTTTTTAACCGGAGGTTTT
AAACTCCGAGTTCTTTTGGCTCAAGTATTGTTTCAAAAGCCGGACGTTCTTCTTTTGGACGAGCCTACCAACCACTTGGA
TATCAAGACGATTCACTGGTTAGAGGAGTTCTTAACCAACTATCGCGGGGTCGTCATCGTGATTTCTCACGACCGCCACT
TTATCAATTCGATTGCAACTCATATCGCGGATTTGGACTATCAGTCTTTAACCGTTTATCCGGGCAACTATGACGATTTT
ATGGAAGCCTCTACGATGGCTCGTGAAAGACTACTCGACGAAAACAAGCGTAAAAAGGAAAAAATCGCCGAACTTCAAGA
CTTCGTAAACCGTTTCAGCGCGAACGCAAGTAAATCGAAACAAGCGACCTCCAGACAAAAACAAATCGAAAAAATCAAAC
TCGATGATATTAAACCTTCATCCAGAGTTTCTCCTTACATTCGTTTTAAGATGAAAAAACCTCTCGGCAAAGATGTGATC
ATAGCGGAAAATATCTCAAAATCCTACGATAGACCTATTTTCAAGGATTTTACGATTAACATCACCAAAGGGGAAAAAAT
TGCGATCATCGGAACCAACGGTGTCGGAAAAACGACACTCTTAAAAACACTAATGAAACAGATCGAACCCGATGCTGGGA
AGGTCGCGATGGGAGATTCGGTTACGTCTTCCGTTTTTCCACAGGATCACAGGGAAGGTATATTAGAAGATGCTGATACA
CTTGTAGAGTGGCTCTACAGATATGCCGATCCTGGAACCGAAATGGAGGAGATACGTGCGATTTTAGGGAGAATGTTATT
TAGCGGAGATATGGCTAAAAAATCCACGAACGTTCTTTCCGGAGGAGAAAAGTCCAGATTGATCATTGGAAGAATGATTA
TCTCCGGAGACAATCTTTTAGCTCTCGACGAACCTACGAATCACTTGGATCTGGAAACGATTGAAGCGCTAAACTACGCT
TTATCCATATTTGAAGGAACCGTAATTTTTGTCTCACACGATCGGGAATTTGTATCCTCGCTCGCGACTCGCGTGATCGA
AGTTTCCACCGAAGGAATCCGTGATTTCAAAGGAACTTACGAAGACTTCTTAGAAAGAGAAGGCGCTGAATTCTACAAAC
GTTTATCCGGCGGCCCGGTCCTTGCGGAAAGTTGA

Upstream 100 bases:

>100_bases
TTTCGGTAAAATTTCGAAAGTCCTTAATTCTACTTTTTCTTGGCAAAAAACCCTATTTTGAAAATCATGGTCATGATTCT
TCCCTAGCAGGTATTTTTAA

Downstream 100 bases:

>100_bases
CAGAGATTTACAAAGCTTGTATCTTACGAACAAGCGGACTCGCATTAGAAAATATTAAGGCCTATCCCAAATCCCGTCGA
GCGCCAATAGAAGCGAGACG

Product: ATP-binding protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MISTSGLTLNFGKKVLFENVTVKFKENCRYGLIGANGSGKSTFMKILAGIEQSASGSVSIDAGIKVGYLKQDHFEYENET
VLNTVIMGNKELWEVSQERDAIYSKPEMSDEDGMRVSELEEKYGELGGYEAESTAGELLEGLGIPTTSHTQTLAFLTGGF
KLRVLLAQVLFQKPDVLLLDEPTNHLDIKTIHWLEEFLTNYRGVVIVISHDRHFINSIATHIADLDYQSLTVYPGNYDDF
MEASTMARERLLDENKRKKEKIAELQDFVNRFSANASKSKQATSRQKQIEKIKLDDIKPSSRVSPYIRFKMKKPLGKDVI
IAENISKSYDRPIFKDFTINITKGEKIAIIGTNGVGKTTLLKTLMKQIEPDAGKVAMGDSVTSSVFPQDHREGILEDADT
LVEWLYRYADPGTEMEEIRAILGRMLFSGDMAKKSTNVLSGGEKSRLIIGRMIISGDNLLALDEPTNHLDLETIEALNYA
LSIFEGTVIFVSHDREFVSSLATRVIEVSTEGIRDFKGTYEDFLEREGAEFYKRLSGGPVLAES

Sequences:

>Translated_544_residues
MISTSGLTLNFGKKVLFENVTVKFKENCRYGLIGANGSGKSTFMKILAGIEQSASGSVSIDAGIKVGYLKQDHFEYENET
VLNTVIMGNKELWEVSQERDAIYSKPEMSDEDGMRVSELEEKYGELGGYEAESTAGELLEGLGIPTTSHTQTLAFLTGGF
KLRVLLAQVLFQKPDVLLLDEPTNHLDIKTIHWLEEFLTNYRGVVIVISHDRHFINSIATHIADLDYQSLTVYPGNYDDF
MEASTMARERLLDENKRKKEKIAELQDFVNRFSANASKSKQATSRQKQIEKIKLDDIKPSSRVSPYIRFKMKKPLGKDVI
IAENISKSYDRPIFKDFTINITKGEKIAIIGTNGVGKTTLLKTLMKQIEPDAGKVAMGDSVTSSVFPQDHREGILEDADT
LVEWLYRYADPGTEMEEIRAILGRMLFSGDMAKKSTNVLSGGEKSRLIIGRMIISGDNLLALDEPTNHLDLETIEALNYA
LSIFEGTVIFVSHDREFVSSLATRVIEVSTEGIRDFKGTYEDFLEREGAEFYKRLSGGPVLAES
>Mature_544_residues
MISTSGLTLNFGKKVLFENVTVKFKENCRYGLIGANGSGKSTFMKILAGIEQSASGSVSIDAGIKVGYLKQDHFEYENET
VLNTVIMGNKELWEVSQERDAIYSKPEMSDEDGMRVSELEEKYGELGGYEAESTAGELLEGLGIPTTSHTQTLAFLTGGF
KLRVLLAQVLFQKPDVLLLDEPTNHLDIKTIHWLEEFLTNYRGVVIVISHDRHFINSIATHIADLDYQSLTVYPGNYDDF
MEASTMARERLLDENKRKKEKIAELQDFVNRFSANASKSKQATSRQKQIEKIKLDDIKPSSRVSPYIRFKMKKPLGKDVI
IAENISKSYDRPIFKDFTINITKGEKIAIIGTNGVGKTTLLKTLMKQIEPDAGKVAMGDSVTSSVFPQDHREGILEDADT
LVEWLYRYADPGTEMEEIRAILGRMLFSGDMAKKSTNVLSGGEKSRLIIGRMIISGDNLLALDEPTNHLDLETIEALNYA
LSIFEGTVIFVSHDREFVSSLATRVIEVSTEGIRDFKGTYEDFLEREGAEFYKRLSGGPVLAES

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=33.1439393939394, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI27881506, Length=523, Percent_Identity=30.7839388145315, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI10947137, Length=523, Percent_Identity=30.7839388145315, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI10947135, Length=521, Percent_Identity=29.5585412667946, Blast_Score=199, Evalue=8e-51,
Organism=Homo sapiens, GI69354671, Length=521, Percent_Identity=29.5585412667946, Blast_Score=199, Evalue=8e-51,
Organism=Homo sapiens, GI21536378, Length=231, Percent_Identity=29.004329004329, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI30795238, Length=244, Percent_Identity=27.4590163934426, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI27881501, Length=244, Percent_Identity=27.4590163934426, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI90421313, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1787041, Length=531, Percent_Identity=55.743879472693, Blast_Score=617, Evalue=1e-178,
Organism=Escherichia coli, GI1789751, Length=529, Percent_Identity=34.2155009451796, Blast_Score=304, Evalue=1e-83,
Organism=Escherichia coli, GI2367384, Length=545, Percent_Identity=32.2935779816514, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI1787182, Length=545, Percent_Identity=33.394495412844, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=26.457399103139, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787112, Length=221, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788225, Length=206, Percent_Identity=25.7281553398058, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=23.728813559322, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI48994943, Length=228, Percent_Identity=28.0701754385965, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=27.0408163265306, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=550, Percent_Identity=33.0909090909091, Blast_Score=260, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI17555318, Length=529, Percent_Identity=31.758034026465, Blast_Score=250, Evalue=2e-66,
Organism=Caenorhabditis elegans, GI17559834, Length=532, Percent_Identity=28.3834586466165, Blast_Score=227, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6321121, Length=550, Percent_Identity=31.2727272727273, Blast_Score=250, Evalue=5e-67,
Organism=Saccharomyces cerevisiae, GI6320874, Length=534, Percent_Identity=30.5243445692884, Blast_Score=240, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6325030, Length=422, Percent_Identity=25.5924170616114, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=378, Percent_Identity=24.3386243386243, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6323278, Length=378, Percent_Identity=24.8677248677249, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24666836, Length=530, Percent_Identity=32.8301886792453, Blast_Score=282, Evalue=4e-76,
Organism=Drosophila melanogaster, GI24642252, Length=538, Percent_Identity=29.7397769516729, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI18859989, Length=538, Percent_Identity=29.7397769516729, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=28.9424860853432, Blast_Score=228, Evalue=9e-60,
Organism=Drosophila melanogaster, GI24641565, Length=209, Percent_Identity=28.2296650717703, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60819; Mature: 60819

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTSGLTLNFGKKVLFENVTVKFKENCRYGLIGANGSGKSTFMKILAGIEQSASGSVSI
CCCCCCCEEECCCHHHHHCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
DAGIKVGYLKQDHFEYENETVLNTVIMGNKELWEVSQERDAIYSKPEMSDEDGMRVSELE
ECCCEEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EKYGELGGYEAESTAGELLEGLGIPTTSHTQTLAFLTGGFKLRVLLAQVLFQKPDVLLLD
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNHLDIKTIHWLEEFLTNYRGVVIVISHDRHFINSIATHIADLDYQSLTVYPGNYDDF
CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHH
MEASTMARERLLDENKRKKEKIAELQDFVNRFSANASKSKQATSRQKQIEKIKLDDIKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
SRVSPYIRFKMKKPLGKDVIIAENISKSYDRPIFKDFTINITKGEKIAIIGTNGVGKTTL
CCCCCEEEEEECCCCCCCEEEECCHHHHHCCCCEECEEEEEECCCEEEEEECCCCCHHHH
LKTLMKQIEPDAGKVAMGDSVTSSVFPQDHREGILEDADTLVEWLYRYADPGTEMEEIRA
HHHHHHHHCCCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ILGRMLFSGDMAKKSTNVLSGGEKSRLIIGRMIISGDNLLALDEPTNHLDLETIEALNYA
HHHHHHHCCCHHHHHCHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHH
LSIFEGTVIFVSHDREFVSSLATRVIEVSTEGIRDFKGTYEDFLEREGAEFYKRLSGGPV
HHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCC
LAES
CCCC
>Mature Secondary Structure
MISTSGLTLNFGKKVLFENVTVKFKENCRYGLIGANGSGKSTFMKILAGIEQSASGSVSI
CCCCCCCEEECCCHHHHHCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
DAGIKVGYLKQDHFEYENETVLNTVIMGNKELWEVSQERDAIYSKPEMSDEDGMRVSELE
ECCCEEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EKYGELGGYEAESTAGELLEGLGIPTTSHTQTLAFLTGGFKLRVLLAQVLFQKPDVLLLD
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNHLDIKTIHWLEEFLTNYRGVVIVISHDRHFINSIATHIADLDYQSLTVYPGNYDDF
CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHH
MEASTMARERLLDENKRKKEKIAELQDFVNRFSANASKSKQATSRQKQIEKIKLDDIKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
SRVSPYIRFKMKKPLGKDVIIAENISKSYDRPIFKDFTINITKGEKIAIIGTNGVGKTTL
CCCCCEEEEEECCCCCCCEEEECCHHHHHCCCCEECEEEEEECCCEEEEEECCCCCHHHH
LKTLMKQIEPDAGKVAMGDSVTSSVFPQDHREGILEDADTLVEWLYRYADPGTEMEEIRA
HHHHHHHHCCCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ILGRMLFSGDMAKKSTNVLSGGEKSRLIIGRMIISGDNLLALDEPTNHLDLETIEALNYA
HHHHHHHCCCHHHHHCHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHH
LSIFEGTVIFVSHDREFVSSLATRVIEVSTEGIRDFKGTYEDFLEREGAEFYKRLSGGPV
HHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCC
LAES
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]