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The map label for this gene is ygdD [C]

Identifier: 116326924

GI number: 116326924

Start: 100759

End: 101151

Strand: Reverse

Name: ygdD [C]

Synonym: LBL_0087

Alternate gene names: 116326924

Gene position: 101151-100759 (Counterclockwise)

Preceding gene: 116326925

Following gene: 116326921

Centisome position: 2.8

GC content: 36.9

Gene sequence:

>393_bases
ATGACAGAAAAACAAAGAACAATTTTTATGCTTTCATCCTTATCGGGATTTTTCGGAGTCGCTTTAGGCGCATTCGGCGC
TCACGCTTTAAAACCGATTTTAACTCCTGAATTATTCGCAATTTATGAAACAGGAAATCGATATCATCTAATTCACAGCG
TTCCCCCTTTGATTTTAGCGATAACGGGATACATAAATAACAGTCGACTTATCTGGTTTTCTTCCATTCTATTTCTCATA
GGAATTCTAGTATTTTCAGGATCTTTATACACATTAGCGATCGTAGGAATTAGAGCGTTAGGAGCAATTACTCCAATTGG
AGGAATCGCATTTTTAATCGCTTGGGGACTTCTTAGTTTTTACGCGGTTCTATCGAAGAAAACTAACGTTTAA

Upstream 100 bases:

>100_bases
CATAGAACAAACGGCTTATTTATTTTGGCTAATTCAGAAAAAATGTATTCGATTTAAAAGTTATGCTATTCAAGAATTTT
GAATTGAGTTCATTGAGTAC

Downstream 100 bases:

>100_bases
TTCCGTAATAGAATTTACCTTTTTTTTCGATTAATCTTCTCGTAATCAAACCCTCCGCAATAATCAAAAGACCTTGGACA
GCGGATTCTTTTTTGGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTEKQRTIFMLSSLSGFFGVALGAFGAHALKPILTPELFAIYETGNRYHLIHSVPPLILAITGYINNSRLIWFSSILFLI
GILVFSGSLYTLAIVGIRALGAITPIGGIAFLIAWGLLSFYAVLSKKTNV

Sequences:

>Translated_130_residues
MTEKQRTIFMLSSLSGFFGVALGAFGAHALKPILTPELFAIYETGNRYHLIHSVPPLILAITGYINNSRLIWFSSILFLI
GILVFSGSLYTLAIVGIRALGAITPIGGIAFLIAWGLLSFYAVLSKKTNV
>Mature_129_residues
TEKQRTIFMLSSLSGFFGVALGAFGAHALKPILTPELFAIYETGNRYHLIHSVPPLILAITGYINNSRLIWFSSILFLIG
ILVFSGSLYTLAIVGIRALGAITPIGGIAFLIAWGLLSFYAVLSKKTNV

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=126, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI193203406, Length=115, Percent_Identity=37.3913043478261, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14090; Mature: 13959

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKQRTIFMLSSLSGFFGVALGAFGAHALKPILTPELFAIYETGNRYHLIHSVPPLILA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCEEEEEECCCHHHHH
ITGYINNSRLIWFSSILFLIGILVFSGSLYTLAIVGIRALGAITPIGGIAFLIAWGLLSF
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YAVLSKKTNV
HHHHHHCCCC
>Mature Secondary Structure 
TEKQRTIFMLSSLSGFFGVALGAFGAHALKPILTPELFAIYETGNRYHLIHSVPPLILA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCEEEEEECCCHHHHH
ITGYINNSRLIWFSSILFLIGILVFSGSLYTLAIVGIRALGAITPIGGIAFLIAWGLLSF
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YAVLSKKTNV
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]