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The map label for this gene is yjhH [C]

Identifier: 116249438

GI number: 116249438

Start: 846695

End: 847645

Strand: Reverse

Name: yjhH [C]

Synonym: pRL120776

Alternate gene names: 116249438

Gene position: 847645-846695 (Counterclockwise)

Preceding gene: 116249439

Following gene: 116249437

Centisome position: 97.43

GC content: 63.62

Gene sequence:

>951_bases
ATGAGCATCGCAACCATGCGCAAGGCGCTTACAGGCGTATCGGGTGTTCCGGTCACCGCCTATGACGGCAAGGGTGAAGT
CGAACCCCGGATCACGGCGAAGGTCTATGAGCGGGTGGCGGCGGCGGGTATTCACAACATCGTCGCTGCCGGCAATACCG
GAGAATTCTATGCTCTGACGCCGCAGGAGATCAGGATCGTCCACGAAGCGGCGGTTTCAGGCGTTGCCGGCAAGGCGCCG
GTGACGGCGGCGATCGGCCGGTCGCTGCGCGAGGCGATCGGCATGGCGAAAGATGCGGCCGCGATCGGCGCATCCGCCGT
CATGTCACATCAGCCCGTCGATCCTTTCGCGGCACCTGCGGCCCAGATCGACTATTTCTGCAATCTTGCGGATGCTTCGT
CCCTGCCGCTCATCGCCTATGTCAGGGCGGATGGTTTCGCCGTCGCCGATATCGTCCGCCTCGCAAATCACGGCAATATT
GCCGGCATCAAATTCGCCACGACCGATCTGATGTTGTTGTCGAGGGCGATCCCGGCGGCGAGCCCCGGCGGCGCGCTGTT
CGTCTGCGGCCTGGCGGAGAGCTGGGCGCCGACATTTACCGCAGCCGGCGCCCGCGGCTTCACGTCCGGCCTCGTCAATG
TGGCGCCGAAGCTCTCGCTTGCGGTCCACGCTGCGCTTGAAAAAGGCGATTTTGCCGCCGCCAGGGCGGTCGTCAACAAG
CTCGAGCCATTCGAACGGATGCGAACCAAATTCCGCAATGGCACGAACGTGACCGTCGTCAAGGAAGCCGTCACCTATTC
CGGTCTCGATGTCGGTCCCGTGCGTGTGCCGGGATTGCCGCAGCTCGACCAGCATGACCGCGAGGAGCTTCATCGGCTGC
TTCAAGGCTGGGAGGCCGAAGGCGACATTCAAACTCATTCAGACCAGCCGGCCGTAAAGGCGGCCGGCTGA

Upstream 100 bases:

>100_bases
TCATCCCGTCGGATGACAGCGTGCCGATCACCCCGGGTGACGGCGTGCCGATCACCCTTCGGGTGACGGCGGATTGATGG
AAAGATAACGGGGAAGAAAG

Downstream 100 bases:

>100_bases
TTTCGACACTATCCACAAACAACAGGATTGGGAGGTCTTGAGATGCTGAGACAAGTACTGACAACGATCGCAATTGCCGG
CGCCCTGACGACGGCGCAGC

Product: putative dihydropicolinate synthase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase 1; KDGDH 1 [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSIATMRKALTGVSGVPVTAYDGKGEVEPRITAKVYERVAAAGIHNIVAAGNTGEFYALTPQEIRIVHEAAVSGVAGKAP
VTAAIGRSLREAIGMAKDAAAIGASAVMSHQPVDPFAAPAAQIDYFCNLADASSLPLIAYVRADGFAVADIVRLANHGNI
AGIKFATTDLMLLSRAIPAASPGGALFVCGLAESWAPTFTAAGARGFTSGLVNVAPKLSLAVHAALEKGDFAAARAVVNK
LEPFERMRTKFRNGTNVTVVKEAVTYSGLDVGPVRVPGLPQLDQHDREELHRLLQGWEAEGDIQTHSDQPAVKAAG

Sequences:

>Translated_316_residues
MSIATMRKALTGVSGVPVTAYDGKGEVEPRITAKVYERVAAAGIHNIVAAGNTGEFYALTPQEIRIVHEAAVSGVAGKAP
VTAAIGRSLREAIGMAKDAAAIGASAVMSHQPVDPFAAPAAQIDYFCNLADASSLPLIAYVRADGFAVADIVRLANHGNI
AGIKFATTDLMLLSRAIPAASPGGALFVCGLAESWAPTFTAAGARGFTSGLVNVAPKLSLAVHAALEKGDFAAARAVVNK
LEPFERMRTKFRNGTNVTVVKEAVTYSGLDVGPVRVPGLPQLDQHDREELHRLLQGWEAEGDIQTHSDQPAVKAAG
>Mature_315_residues
SIATMRKALTGVSGVPVTAYDGKGEVEPRITAKVYERVAAAGIHNIVAAGNTGEFYALTPQEIRIVHEAAVSGVAGKAPV
TAAIGRSLREAIGMAKDAAAIGASAVMSHQPVDPFAAPAAQIDYFCNLADASSLPLIAYVRADGFAVADIVRLANHGNIA
GIKFATTDLMLLSRAIPAASPGGALFVCGLAESWAPTFTAAGARGFTSGLVNVAPKLSLAVHAALEKGDFAAARAVVNKL
EPFERMRTKFRNGTNVTVVKEAVTYSGLDVGPVRVPGLPQLDQHDREELHRLLQGWEAEGDIQTHSDQPAVKAAG

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI87082415, Length=301, Percent_Identity=26.2458471760797, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786463, Length=286, Percent_Identity=25.5244755244755, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.41 [H]

Molecular weight: Translated: 32842; Mature: 32711

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIATMRKALTGVSGVPVTAYDGKGEVEPRITAKVYERVAAAGIHNIVAAGNTGEFYALT
CCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEC
PQEIRIVHEAAVSGVAGKAPVTAAIGRSLREAIGMAKDAAAIGASAVMSHQPVDPFAAPA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCH
AQIDYFCNLADASSLPLIAYVRADGFAVADIVRLANHGNIAGIKFATTDLMLLSRAIPAA
HHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCC
SPGGALFVCGLAESWAPTFTAAGARGFTSGLVNVAPKLSLAVHAALEKGDFAAARAVVNK
CCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
LEPFERMRTKFRNGTNVTVVKEAVTYSGLDVGPVRVPGLPQLDQHDREELHRLLQGWEAE
CCHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
GDIQTHSDQPAVKAAG
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIATMRKALTGVSGVPVTAYDGKGEVEPRITAKVYERVAAAGIHNIVAAGNTGEFYALT
CHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEC
PQEIRIVHEAAVSGVAGKAPVTAAIGRSLREAIGMAKDAAAIGASAVMSHQPVDPFAAPA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCH
AQIDYFCNLADASSLPLIAYVRADGFAVADIVRLANHGNIAGIKFATTDLMLLSRAIPAA
HHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCC
SPGGALFVCGLAESWAPTFTAAGARGFTSGLVNVAPKLSLAVHAALEKGDFAAARAVVNK
CCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
LEPFERMRTKFRNGTNVTVVKEAVTYSGLDVGPVRVPGLPQLDQHDREELHRLLQGWEAE
CCHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
GDIQTHSDQPAVKAAG
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]