BacMap

Definition	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence.
Accession	NC_008378
Length	870,021

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The map label for this gene is oppD [H]

Identifier: 116249434

GI number: 116249434

Start: 842171

End: 843025

Strand: Reverse

Name: oppD [H]

Synonym: pRL120772

Alternate gene names: 116249434

Gene position: 843025-842171 (Counterclockwise)

Preceding gene: 116249435

Following gene: 116249433

Centisome position: 96.9

GC content: 60.47

Gene sequence:

>855_bases
ATGACTGACCTGATCGATATTCAGAACCTCGAAATCGCCTTCGGCGGCGGACAGGTGCGGGCCGTGCGCGGCGTGAGCTT
TTCGCTTGGACAGGAAAAGCTAGGGATCGTCGGTGAATCCGGGTCGGGAAAGTCGACCGTTGGCCGCGCCATCATGAAGC
TGCTGCCACCGACCGCGATCGTCAATGCCGAGCGGATGCGCTTTCGCGACGTCGATCTGCTCAAGGCGAACGAAAAAACG
ATGATGACGATCAGGGGGCGGCGGATCGGCCTGATCCTTCAGGATCCGAAATATTCGCTCAATCCCGTCATGCGGATCGG
CGAACAGATCGCCGAGACCTACCGCTTCCATCATCCGAGGACGAGCAACAAGAAGACCTGGCAGAAGGCGCTCGATATGC
TCGAGGCCGTCCAGATCCGTGATCCGGAGCGTGTGGCCCGCCTTTACCCGCACGAAATCTCGGGCGGGATGGGCCAGCGG
GCGATGATCGCCATGATGCTGATTGCCGAACCCGAAGTGCTGATCGCCGACGAACCGACGTCGGCACTCGATGTGACGGT
GAGGCTCGAGATCCTGGCCCTGCTCGACGAACTCGTCTTGCGCCGCAATCTCGGGCTGATCTTCATCAGCCACGATCTCA
ATCTCATCCGGAATTTCTGCGATCGCGTCCTCATCATGTATGCGGGGCGGGTCGTGGAAGTGCTCGAGGCGCGCGATCTC
GACAAGGCCAGACATCCCTATACGCAAGGGTTGCTGGCATCCTTGCCGACGATCGAAGATCCCCCTGCCCGGCTGCCGAT
CCTGAAACGAGATCCGGCCTGGCTTGAAGAATTCGCATTGGAGCCGCCGCGGTGA

Upstream 100 bases:

>100_bases
GGGTCATCGCAGCACCCGGCATTGCCATTGCGCTCGTCAGCCTCGCCTTCAACCTCGTCGGCGATGCGCTTCGCGATGTT
CTCGATCCCCGAGGTTCGGA

Downstream 100 bases:

>100_bases
TTAAAATCGACAATCTTACGGTCCGTTTCGGACCCGGGCAGCGGCCTGTCGTTCGAGACGTAAGCTTCGCCATCGAAAAG
GGAACTGCTTTCGGCCTGGT

Product: putative ATP-binding protein component of ABC transporter

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTDLIDIQNLEIAFGGGQVRAVRGVSFSLGQEKLGIVGESGSGKSTVGRAIMKLLPPTAIVNAERMRFRDVDLLKANEKT
MMTIRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPRTSNKKTWQKALDMLEAVQIRDPERVARLYPHEISGGMGQR
AMIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVLRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDL
DKARHPYTQGLLASLPTIEDPPARLPILKRDPAWLEEFALEPPR

Sequences:

>Translated_284_residues
MTDLIDIQNLEIAFGGGQVRAVRGVSFSLGQEKLGIVGESGSGKSTVGRAIMKLLPPTAIVNAERMRFRDVDLLKANEKT
MMTIRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPRTSNKKTWQKALDMLEAVQIRDPERVARLYPHEISGGMGQR
AMIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVLRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDL
DKARHPYTQGLLASLPTIEDPPARLPILKRDPAWLEEFALEPPR
>Mature_283_residues
TDLIDIQNLEIAFGGGQVRAVRGVSFSLGQEKLGIVGESGSGKSTVGRAIMKLLPPTAIVNAERMRFRDVDLLKANEKTM
MTIRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPRTSNKKTWQKALDMLEAVQIRDPERVARLYPHEISGGMGQRA
MIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVLRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDLD
KARHPYTQGLLASLPTIEDPPARLPILKRDPAWLEEFALEPPR

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=242, Percent_Identity=30.1652892561983, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI48994883, Length=301, Percent_Identity=40.1993355481728, Blast_Score=207, Evalue=4e-55,
Organism=Escherichia coli, GI1789963, Length=270, Percent_Identity=44.0740740740741, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787759, Length=270, Percent_Identity=42.962962962963, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI145693107, Length=282, Percent_Identity=42.9078014184397, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=40.9774436090226, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=36.7424242424242, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1787500, Length=271, Percent_Identity=39.8523985239852, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789962, Length=242, Percent_Identity=40.495867768595, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1787758, Length=246, Percent_Identity=37.8048780487805, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=33.1914893617021, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=35, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787547, Length=242, Percent_Identity=30.5785123966942, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789032, Length=199, Percent_Identity=34.1708542713568, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=31.1688311688312, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=29.6875, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=233, Percent_Identity=28.755364806867, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=30.9012875536481, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788225, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787370, Length=291, Percent_Identity=24.7422680412371, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787089, Length=236, Percent_Identity=28.3898305084746, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=32.4444444444444, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=27.5, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081791, Length=254, Percent_Identity=27.5590551181102, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=28.936170212766, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=289, Percent_Identity=25.9515570934256, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=25.2100840336134, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=30.5, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787105, Length=249, Percent_Identity=28.1124497991968, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786803, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789873, Length=229, Percent_Identity=27.9475982532751, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.8026905829596, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788644, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994943, Length=272, Percent_Identity=27.2058823529412, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=28.936170212766, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082267, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=116, Percent_Identity=36.2068965517241, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=239, Percent_Identity=27.6150627615063, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=27.5423728813559, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=253, Percent_Identity=26.8774703557312, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788472, Length=224, Percent_Identity=24.1071428571429, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=32.2869955156951, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI25146777, Length=258, Percent_Identity=29.0697674418605, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=231, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=219, Percent_Identity=28.7671232876712, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534520, Length=235, Percent_Identity=28.0851063829787, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=234, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=257, Percent_Identity=28.7937743190661, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=256, Percent_Identity=28.125, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=257, Percent_Identity=28.7937743190661, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=260, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=265, Percent_Identity=26.0377358490566, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321752, Length=246, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=29.8642533936652, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85726357, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31961; Mature: 31830

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLIDIQNLEIAFGGGQVRAVRGVSFSLGQEKLGIVGESGSGKSTVGRAIMKLLPPTAI
CCCCEECCCEEEEECCCEEEEEECCCHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCHHH
VNAERMRFRDVDLLKANEKTMMTIRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPR
CCHHHHHHCCCCEEECCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
TSNKKTWQKALDMLEAVQIRDPERVARLYPHEISGGMGQRAMIAMMLIAEPEVLIADEPT
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCC
SALDVTVRLEILALLDELVLRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDL
CCEEHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKARHPYTQGLLASLPTIEDPPARLPILKRDPAWLEEFALEPPR
HHHCCCHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHCCCCCC
>Mature Secondary Structure 
TDLIDIQNLEIAFGGGQVRAVRGVSFSLGQEKLGIVGESGSGKSTVGRAIMKLLPPTAI
CCCEECCCEEEEECCCEEEEEECCCHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCHHH
VNAERMRFRDVDLLKANEKTMMTIRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPR
CCHHHHHHCCCCEEECCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
TSNKKTWQKALDMLEAVQIRDPERVARLYPHEISGGMGQRAMIAMMLIAEPEVLIADEPT
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCC
SALDVTVRLEILALLDELVLRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDL
CCEEHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKARHPYTQGLLASLPTIEDPPARLPILKRDPAWLEEFALEPPR
HHHCCCHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]