| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249428
Identifier: 116249428
GI number: 116249428
Start: 834505
End: 835053
Strand: Reverse
Name: 116249428
Synonym: pRL120766
Alternate gene names: NA
Gene position: 835053-834505 (Counterclockwise)
Preceding gene: 116249430
Following gene: 116249427
Centisome position: 95.98
GC content: 59.74
Gene sequence:
>549_bases ATGATGCGGATGTTACGCGGCCCGAAAGTTACTCAGATGATTAAGATCCTTGCCTGCGCCATCGCCGCAGCGACGGCGTC AATGCTCACCGCCGGTGCGGCCCACGCCGACGAATCCGCCTTCCTCAAAACACTGGCGGGAAATTGGAGCGGCAACGGTA CGGTGAAAGTGCGGACAAATGCACCCACCATTAAAGTCACTTGCCGTTTCACGTCGGACGCGAATGCGAGCTCCCTTGCG CTCAATGGGCGCTGCACCAGTCTCGTCGTTTTTTCCCGTGTCATCAGCGCTAACCTCAAGGCCAGCGGTGACAGCTACAC CGGCTCCTACGTGGGCGCGGGCACAGGTACCGCGGGTCTTGGCGGAAAGCGCGCGGGTAATGCCATAAGCCTCGCGATCA AATGGGCGAAAGAGGTCAATGGCGATCGCCGTGCGCAGATGACAATCGAAAAAACCGGGGCATCGGGCATGCGCCTCACA ACCGTCGATACCGACCCCGCTACAGGTCGATCGGTTGTTACGAGCCGCATTGACCTTCGTCGGAGCTGA
Upstream 100 bases:
>100_bases GTGCGCGCCGCGTTGGGAACGCGATCGAATGCCTCCGATACGGAACCAAATCATCGCCGAGCGGTTATATGACACCCTCA TCCTCGAAGAGCCGAGCGTC
Downstream 100 bases:
>100_bases TATCTTTTTACATTCAAAGAGCCGTCGGCGTGCTAAAGGGTTGATAGAGAAGCCCCGAAGCTATAGTTTCGCCTTCGCAA ATCGCTGAACGATACAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MMRMLRGPKVTQMIKILACAIAAATASMLTAGAAHADESAFLKTLAGNWSGNGTVKVRTNAPTIKVTCRFTSDANASSLA LNGRCTSLVVFSRVISANLKASGDSYTGSYVGAGTGTAGLGGKRAGNAISLAIKWAKEVNGDRRAQMTIEKTGASGMRLT TVDTDPATGRSVVTSRIDLRRS
Sequences:
>Translated_182_residues MMRMLRGPKVTQMIKILACAIAAATASMLTAGAAHADESAFLKTLAGNWSGNGTVKVRTNAPTIKVTCRFTSDANASSLA LNGRCTSLVVFSRVISANLKASGDSYTGSYVGAGTGTAGLGGKRAGNAISLAIKWAKEVNGDRRAQMTIEKTGASGMRLT TVDTDPATGRSVVTSRIDLRRS >Mature_182_residues MMRMLRGPKVTQMIKILACAIAAATASMLTAGAAHADESAFLKTLAGNWSGNGTVKVRTNAPTIKVTCRFTSDANASSLA LNGRCTSLVVFSRVISANLKASGDSYTGSYVGAGTGTAGLGGKRAGNAISLAIKWAKEVNGDRRAQMTIEKTGASGMRLT TVDTDPATGRSVVTSRIDLRRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18830; Mature: 18830
Theoretical pI: Translated: 11.25; Mature: 11.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRMLRGPKVTQMIKILACAIAAATASMLTAGAAHADESAFLKTLAGNWSGNGTVKVRTN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEC APTIKVTCRFTSDANASSLALNGRCTSLVVFSRVISANLKASGDSYTGSYVGAGTGTAGL CCEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCC GGKRAGNAISLAIKWAKEVNGDRRAQMTIEKTGASGMRLTTVDTDPATGRSVVTSRIDLR CCCCCCCEEEEEEEEHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHEECCC RS CC >Mature Secondary Structure MMRMLRGPKVTQMIKILACAIAAATASMLTAGAAHADESAFLKTLAGNWSGNGTVKVRTN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEC APTIKVTCRFTSDANASSLALNGRCTSLVVFSRVISANLKASGDSYTGSYVGAGTGTAGL CCEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCC GGKRAGNAISLAIKWAKEVNGDRRAQMTIEKTGASGMRLTTVDTDPATGRSVVTSRIDLR CCCCCCCEEEEEEEEHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHEECCC RS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA