Click here to switch to the map view.

The map label for this gene is 116249292

Identifier: 116249292

GI number: 116249292

Start: 682197

End: 684152

Strand: Reverse

Name: 116249292

Synonym: pRL120627

Alternate gene names: NA

Gene position: 684152-682197 (Counterclockwise)

Preceding gene: 116249293

Following gene: 116249291

Centisome position: 78.64

GC content: 59.3

Gene sequence:

>1956_bases
ATGCTTCAGCTCGATCATCGTCATAGCATAGAGTTACATTTCGCAATCCCGGTTTCCCTTCCCGGTTGCTTGTCAGGAGC
CGAAGTTGTGGCAGACTGGCCCCTGGATGCTAGATCTTCCGGCCGCCAAACGAGCGTATCGGAGGCAGCGGGGGCGGGGC
CGGTGGATCGCATGAACAAGGAGCACTATCCGTTTCGGATGTTCCTGCTCGGGCCTTTTGCCCTTGTGGACGCCGGGGGG
CGGTCGGTTGCTCCGAAATCCAAAAAGGCACAGGCTCTTCTGGCAATGCTTGCATTGTCCACCCGGGGCTCGCGCTCGAG
AATCTGGCTTAGGGACAAGTTATGGAGCGATCGCTCCGACGACCAGGCGGCAGCCAGTCTACGCCAGGCGCTTTTGGACA
TTCATAAGAGTCTGGGACCGGCACGTGATCTCTTGATTGCGGATAAGAATACCGTTTGGCTGGATACGGACCGACTCCTG
CTCGATACCGACCTGATGATTCGGACGGAGCGGTCTCCAGATCAAGTCACCGACGAATTGCTCGAAGGCATCGACATCCG
CGATCCCGAATTCGAGGACTGGTTGGCGCTGGAACGGCAAAACTGGTATCGCCGCCTCGATGAAGGACAAGTCCACGACG
TCTTCGAGCCGCGACAGCAGCCGAGCCGCGATATCGCCAAACATTCCGCCCTGCTGCCGTTAACAGGCGCCCCGGATACG
TCGAGAACAGGCAAACCCGTGGACATCGCCAGCAGCGGCCCATATGGGCGGCGGGTTGGTGGTGATTGGCAATGGATGAT
GGCTCTTCAGTCCCCCATCGTGGTGGGTGCCGGAGAGGGCGGACAAATTGCTGCGACACGGTTCCAGAACCTCATTGCAA
AAGCCATCATCGATGGGCTGGGTTTTGGCGTCACCGACCTCTCCTTCACCTTGCCGCATATTGAAGAGAACGAACAGCAG
ATCAGCCTTCCCATATGCCTACAGCTTCGCCTGACGTTTGATGGTGACATGGTGCTGATCGAGCTGGTGATGAAGCACCT
GATCAACAACCGTATTCATTGGCTGGGCAGTCAGGCAATCAACCGCACGCAGTTCGAGCGGGGCGAGTTCGGCATCGCCG
CTGCGCTGATCAGCCAGGCCGTCGATCAGCTGGCCTATTTCCAGGAGATCCAGGCAACCGACAGCCGATTGTCGCAAGAC
GGTCTCCTGATCGACGCCGTCAATGCGATTTTTCGGCTGTCGCGCGACGACCTCGATAACGCGGAACGGCGGCTGGAAGA
ACAGATCCAGTATCAGCCGCGATCATCGACTTTTGCCTGGCTGTCATTCATTCGGACTTTCCAGGTCGGCCAACGTTTCA
ACGCGCTGGACGCGCATCTGATCGAGGAAGCCCAGGCCTATGCACGCAAGGCGCTGGAACTCGATCCGCAGAATTCCGTG
TCGCTCGCGCTCGTCGGCCACGTCCATTCGTTCCTGTTCGGCGAATACGACTATGCGGCCAACCTGTTCGAAAAATCGAT
CCGCCTGAATCCGGCCCTGCCGCTCGGTTGGGACCTCTACGCGATGCTGCACTGCTATGCAGGCCAGCCCGACAAGGCGG
TGGCGATGGCGCGTTGGGTACAAGAGCTCGGCGTCTACAGCCCGCATAAATATTACTTCGATACGACCAAATGCATCGCG
GCAGCGCTTGCAGGCGATCATGCCGCAGCCATAACTGCAGGCGAAGAAGCCTTGCGGGCACGGCCGAACTTCAACAGCCT
GCTGCGCTATCTTGCCTCCAGTCATGCCCATTCCAACGATCTCGGCAGCGCGCGGCATTACCTGCAGCGTCTTGAGGCAG
TCGAGGGCGGCTTCTCCATCAACGACTTCCGCGGCAGCGGCTATCCGCTGCTCGACACAGGCGGCGGCCAGATCTTGATC
GACGGCCTGCTCAAGGCCGGCGCCAAGCTGCGCTGA

Upstream 100 bases:

>100_bases
TGCAAAATTACGGTGCCCAAACAACATTTCTTTGACGCTGCTTTGACGGCAGGATGCTACGGCCGGTTTGCGAAGTTACG
CAGAGGGATTTCAACCGGTT

Downstream 100 bases:

>100_bases
GCCCCGGACAATTCTTCACATCATCGCGCAAGGAGGCTGCAATGGAAGCGGACACTGCCCACGAATCGCAATCAAAATTA
GTTTTATTTCTAAACAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: SARP Family Transcriptional Regulator; Transcriptional Regulator Domain Protein; Transcriptional Regulator; TPR Repeat-Containing Protein; Integral Membrane Protein-Like

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MLQLDHRHSIELHFAIPVSLPGCLSGAEVVADWPLDARSSGRQTSVSEAAGAGPVDRMNKEHYPFRMFLLGPFALVDAGG
RSVAPKSKKAQALLAMLALSTRGSRSRIWLRDKLWSDRSDDQAAASLRQALLDIHKSLGPARDLLIADKNTVWLDTDRLL
LDTDLMIRTERSPDQVTDELLEGIDIRDPEFEDWLALERQNWYRRLDEGQVHDVFEPRQQPSRDIAKHSALLPLTGAPDT
SRTGKPVDIASSGPYGRRVGGDWQWMMALQSPIVVGAGEGGQIAATRFQNLIAKAIIDGLGFGVTDLSFTLPHIEENEQQ
ISLPICLQLRLTFDGDMVLIELVMKHLINNRIHWLGSQAINRTQFERGEFGIAAALISQAVDQLAYFQEIQATDSRLSQD
GLLIDAVNAIFRLSRDDLDNAERRLEEQIQYQPRSSTFAWLSFIRTFQVGQRFNALDAHLIEEAQAYARKALELDPQNSV
SLALVGHVHSFLFGEYDYAANLFEKSIRLNPALPLGWDLYAMLHCYAGQPDKAVAMARWVQELGVYSPHKYYFDTTKCIA
AALAGDHAAAITAGEEALRARPNFNSLLRYLASSHAHSNDLGSARHYLQRLEAVEGGFSINDFRGSGYPLLDTGGGQILI
DGLLKAGAKLR

Sequences:

>Translated_651_residues
MLQLDHRHSIELHFAIPVSLPGCLSGAEVVADWPLDARSSGRQTSVSEAAGAGPVDRMNKEHYPFRMFLLGPFALVDAGG
RSVAPKSKKAQALLAMLALSTRGSRSRIWLRDKLWSDRSDDQAAASLRQALLDIHKSLGPARDLLIADKNTVWLDTDRLL
LDTDLMIRTERSPDQVTDELLEGIDIRDPEFEDWLALERQNWYRRLDEGQVHDVFEPRQQPSRDIAKHSALLPLTGAPDT
SRTGKPVDIASSGPYGRRVGGDWQWMMALQSPIVVGAGEGGQIAATRFQNLIAKAIIDGLGFGVTDLSFTLPHIEENEQQ
ISLPICLQLRLTFDGDMVLIELVMKHLINNRIHWLGSQAINRTQFERGEFGIAAALISQAVDQLAYFQEIQATDSRLSQD
GLLIDAVNAIFRLSRDDLDNAERRLEEQIQYQPRSSTFAWLSFIRTFQVGQRFNALDAHLIEEAQAYARKALELDPQNSV
SLALVGHVHSFLFGEYDYAANLFEKSIRLNPALPLGWDLYAMLHCYAGQPDKAVAMARWVQELGVYSPHKYYFDTTKCIA
AALAGDHAAAITAGEEALRARPNFNSLLRYLASSHAHSNDLGSARHYLQRLEAVEGGFSINDFRGSGYPLLDTGGGQILI
DGLLKAGAKLR
>Mature_651_residues
MLQLDHRHSIELHFAIPVSLPGCLSGAEVVADWPLDARSSGRQTSVSEAAGAGPVDRMNKEHYPFRMFLLGPFALVDAGG
RSVAPKSKKAQALLAMLALSTRGSRSRIWLRDKLWSDRSDDQAAASLRQALLDIHKSLGPARDLLIADKNTVWLDTDRLL
LDTDLMIRTERSPDQVTDELLEGIDIRDPEFEDWLALERQNWYRRLDEGQVHDVFEPRQQPSRDIAKHSALLPLTGAPDT
SRTGKPVDIASSGPYGRRVGGDWQWMMALQSPIVVGAGEGGQIAATRFQNLIAKAIIDGLGFGVTDLSFTLPHIEENEQQ
ISLPICLQLRLTFDGDMVLIELVMKHLINNRIHWLGSQAINRTQFERGEFGIAAALISQAVDQLAYFQEIQATDSRLSQD
GLLIDAVNAIFRLSRDDLDNAERRLEEQIQYQPRSSTFAWLSFIRTFQVGQRFNALDAHLIEEAQAYARKALELDPQNSV
SLALVGHVHSFLFGEYDYAANLFEKSIRLNPALPLGWDLYAMLHCYAGQPDKAVAMARWVQELGVYSPHKYYFDTTKCIA
AALAGDHAAAITAGEEALRARPNFNSLLRYLASSHAHSNDLGSARHYLQRLEAVEGGFSINDFRGSGYPLLDTGGGQILI
DGLLKAGAKLR

Specific function: Unknown

COG id: COG3629

COG function: function code T; DNA-binding transcriptional activator of the SARP family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72295; Mature: 72295

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLDHRHSIELHFAIPVSLPGCLSGAEVVADWPLDARSSGRQTSVSEAAGAGPVDRMNK
CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCHHHCCC
EHYPFRMFLLGPFALVDAGGRSVAPKSKKAQALLAMLALSTRGSRSRIWLRDKLWSDRSD
CCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCC
DQAAASLRQALLDIHKSLGPARDLLIADKNTVWLDTDRLLLDTDLMIRTERSPDQVTDEL
HHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEECCCEEEECCEEEEECCCHHHHHHHH
LEGIDIRDPEFEDWLALERQNWYRRLDEGQVHDVFEPRQQPSRDIAKHSALLPLTGAPDT
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHCCEEEECCCCCC
SRTGKPVDIASSGPYGRRVGGDWQWMMALQSPIVVGAGEGGQIAATRFQNLIAKAIIDGL
CCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
GFGVTDLSFTLPHIEENEQQISLPICLQLRLTFDGDMVLIELVMKHLINNRIHWLGSQAI
CCCHHHHEEECCCCCCCCCEEECEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHH
NRTQFERGEFGIAAALISQAVDQLAYFQEIQATDSRLSQDGLLIDAVNAIFRLSRDDLDN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
AERRLEEQIQYQPRSSTFAWLSFIRTFQVGQRFNALDAHLIEEAQAYARKALELDPQNSV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCE
SLALVGHVHSFLFGEYDYAANLFEKSIRLNPALPLGWDLYAMLHCYAGQPDKAVAMARWV
EEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
QELGVYSPHKYYFDTTKCIAAALAGDHAAAITAGEEALRARPNFNSLLRYLASSHAHSND
HHHCCCCCCCEECHHHHHHHHHHCCCCCEEEECCHHHHHCCCCHHHHHHHHHHCCCCCCC
LGSARHYLQRLEAVEGGFSINDFRGSGYPLLDTGGGQILIDGLLKAGAKLR
HHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEHHHHHHCCCCCC
>Mature Secondary Structure
MLQLDHRHSIELHFAIPVSLPGCLSGAEVVADWPLDARSSGRQTSVSEAAGAGPVDRMNK
CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCHHHCCC
EHYPFRMFLLGPFALVDAGGRSVAPKSKKAQALLAMLALSTRGSRSRIWLRDKLWSDRSD
CCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCC
DQAAASLRQALLDIHKSLGPARDLLIADKNTVWLDTDRLLLDTDLMIRTERSPDQVTDEL
HHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEECCCEEEECCEEEEECCCHHHHHHHH
LEGIDIRDPEFEDWLALERQNWYRRLDEGQVHDVFEPRQQPSRDIAKHSALLPLTGAPDT
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHCCEEEECCCCCC
SRTGKPVDIASSGPYGRRVGGDWQWMMALQSPIVVGAGEGGQIAATRFQNLIAKAIIDGL
CCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
GFGVTDLSFTLPHIEENEQQISLPICLQLRLTFDGDMVLIELVMKHLINNRIHWLGSQAI
CCCHHHHEEECCCCCCCCCEEECEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHH
NRTQFERGEFGIAAALISQAVDQLAYFQEIQATDSRLSQDGLLIDAVNAIFRLSRDDLDN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
AERRLEEQIQYQPRSSTFAWLSFIRTFQVGQRFNALDAHLIEEAQAYARKALELDPQNSV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCE
SLALVGHVHSFLFGEYDYAANLFEKSIRLNPALPLGWDLYAMLHCYAGQPDKAVAMARWV
EEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
QELGVYSPHKYYFDTTKCIAAALAGDHAAAITAGEEALRARPNFNSLLRYLASSHAHSND
HHHCCCCCCCEECHHHHHHHHHHCCCCCEEEECCHHHHHCCCCHHHHHHHHHHCCCCCCC
LGSARHYLQRLEAVEGGFSINDFRGSGYPLLDTGGGQILIDGLLKAGAKLR
HHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA