| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249290
Identifier: 116249290
GI number: 116249290
Start: 679396
End: 681090
Strand: Reverse
Name: 116249290
Synonym: pRL120625
Alternate gene names: NA
Gene position: 681090-679396 (Counterclockwise)
Preceding gene: 116249291
Following gene: 116249289
Centisome position: 78.28
GC content: 60.06
Gene sequence:
>1695_bases ATGACGGATCAAACAAAAATGCCTGAGCCCGCGCCGATCAACTACTACTATCTCTGGCACCTGACTGCTCTTGGCGTAGT CGACGCGGAATACGGATCGGCTCCGCCGATGCCTCCAGCGCCCGATGCGAGCGCCGCACGCGCGCTCCCCGATCCCCTCA TCACCGGCACGGTCTGGGATGCCATCGTTTCCGCCGGCCCGTTGCGGCCGGCACGGGTCGCGCTGATCGATGTCGGCGTA TCTCCGGATCATCCCAATCTGGCAACCCGGCTTGACCGGGAGGCGTCAATCGATTTGACGACCCATCGTTACGGCGCCCG CGTGCTCGAAATTCTCGATACGACCACGTCCTTCGACCGCGAGGAAAGACATGCCTTCTTTGCCGGGCTCGACATTGCTC CGCTCGGCAATATGGGCCTTTCGAACGACGATCGGGACTATCTTGGTGATCTGGTTGCCGAATACGCCGCGTCGGAGGGT GTCCTCCGGCGGCTCTATAATCCGGAATCGCTGTTTGCGTCGCATGGTACCTGCTGCGCAGGGCTGATCGTCGGCGAACC CGCCGTTGTTGCGGAAGAAGGCACGCCAAGCCTTCCGCCGGAAGGAGCCTTCTACGGGAATGGCGACGAGCTGCGGACGA GCGGCAATCGCAATGTTATCCCCTATTTCGGCGTTGACCCTTTCTCAAGGCTTATCTCGATCAGAACATCCTTCGAAGAC GATGTCAGGCAGTTCATTGCGGCCTTCCTTTACGCCTATCTTCAGAAAGCAGACGTAATCGTCTTGCCGCGCGGTCTGCC TGACCCGAAACACAGCATCGTTGATCCGAAGAACGAGCTGAAGGCCGACCTGGAATTGTGGAAAAACCAGGATGCCGCCA ATCTGTTCACGCGCATTGCCCTTGCTGATCAGGGTGGGCCTGAACTGGAGCCGAAGGCTGCGCAGAAAGGCTCCAATCCG GATCGCCCATGGCATGTCCTCAAACAACTCATCCTCGCGATCAGCCGGCACATCCCGATCGTCTGCGCCGCAGGAAACAG TGGCGAGAGCCAGCTGATCTATCCGGCAAATCTTGCCGCCGACAACAACGGCGTCATTGCAGTTGGAGCCGTTACCGTCG AAGGTTTCCGTTCGGGCTACAGTAATTACGGCGAAGGATTGACGGTTGTCTCCCCCTCCGACGACGGGGAGGTCTTCAAC AGGCATCAGTTGCGCCTCGACCGGCTTTCTCCATTTGCCGCGCAGCACGACTACAGCGCATTTCGAACGCGGGAATACTG CTATTCGCACTTCTCGCTGCTGACGACCGACCTATCGGGGATTTTCGGCTATGATCATGGCTCCGATCCGTGGTCGGCCG TCGTGCCGTTCGGAACCAATCCCGGCATCGGGGGCGGATACTACACCACCTTCGGAGGCACATCAGGCGCGGCGGCGCAG GTGGGCGGGCTATGTGCCCTGATACAGCGGGCCTACAAAAGCCGCCACAATCTGGGTGACCGCCTCTCCGGGCCCCAAGT GAAATCGATTCTGAAGACCGCATCCCGCCTGGACGCCATTGTCGCGCCCGGAACGAGGAAATTGACGGCGGATTGCATGA ACGCCGAAAGCGAGGACGCCGTCGAGATGGCCTATTTCTTTGGATCAGGCCTGCCAAATGCGCGGGCGGCGGTACAGGCA GCTCTGGCCATCTGA
Upstream 100 bases:
>100_bases CTTCGCTCCCTACCTCCACGACGCGTTCGGGCCTCTGTTCCAGGCCGTACACGACGAATGGGTCTGAATTCTCCAACCGC TGCTCAATAGGGTTACAACC
Downstream 100 bases:
>100_bases AGCCCGGGGATGCTTTTCGAAAGATTCCAAGCCTCCTCTATCGAGGGGGCTTTTTCTTTGTTTACGACCTTTTTACGGAT TTTTAACGCGGTACTGGCGG
Product: putative peptidase
Products: NA
Alternate protein names: Peptidase S8/S53 Subtilisin Kexin Sedolisin
Number of amino acids: Translated: 564; Mature: 563
Protein sequence:
>564_residues MTDQTKMPEPAPINYYYLWHLTALGVVDAEYGSAPPMPPAPDASAARALPDPLITGTVWDAIVSAGPLRPARVALIDVGV SPDHPNLATRLDREASIDLTTHRYGARVLEILDTTTSFDREERHAFFAGLDIAPLGNMGLSNDDRDYLGDLVAEYAASEG VLRRLYNPESLFASHGTCCAGLIVGEPAVVAEEGTPSLPPEGAFYGNGDELRTSGNRNVIPYFGVDPFSRLISIRTSFED DVRQFIAAFLYAYLQKADVIVLPRGLPDPKHSIVDPKNELKADLELWKNQDAANLFTRIALADQGGPELEPKAAQKGSNP DRPWHVLKQLILAISRHIPIVCAAGNSGESQLIYPANLAADNNGVIAVGAVTVEGFRSGYSNYGEGLTVVSPSDDGEVFN RHQLRLDRLSPFAAQHDYSAFRTREYCYSHFSLLTTDLSGIFGYDHGSDPWSAVVPFGTNPGIGGGYYTTFGGTSGAAAQ VGGLCALIQRAYKSRHNLGDRLSGPQVKSILKTASRLDAIVAPGTRKLTADCMNAESEDAVEMAYFFGSGLPNARAAVQA ALAI
Sequences:
>Translated_564_residues MTDQTKMPEPAPINYYYLWHLTALGVVDAEYGSAPPMPPAPDASAARALPDPLITGTVWDAIVSAGPLRPARVALIDVGV SPDHPNLATRLDREASIDLTTHRYGARVLEILDTTTSFDREERHAFFAGLDIAPLGNMGLSNDDRDYLGDLVAEYAASEG VLRRLYNPESLFASHGTCCAGLIVGEPAVVAEEGTPSLPPEGAFYGNGDELRTSGNRNVIPYFGVDPFSRLISIRTSFED DVRQFIAAFLYAYLQKADVIVLPRGLPDPKHSIVDPKNELKADLELWKNQDAANLFTRIALADQGGPELEPKAAQKGSNP DRPWHVLKQLILAISRHIPIVCAAGNSGESQLIYPANLAADNNGVIAVGAVTVEGFRSGYSNYGEGLTVVSPSDDGEVFN RHQLRLDRLSPFAAQHDYSAFRTREYCYSHFSLLTTDLSGIFGYDHGSDPWSAVVPFGTNPGIGGGYYTTFGGTSGAAAQ VGGLCALIQRAYKSRHNLGDRLSGPQVKSILKTASRLDAIVAPGTRKLTADCMNAESEDAVEMAYFFGSGLPNARAAVQA ALAI >Mature_563_residues TDQTKMPEPAPINYYYLWHLTALGVVDAEYGSAPPMPPAPDASAARALPDPLITGTVWDAIVSAGPLRPARVALIDVGVS PDHPNLATRLDREASIDLTTHRYGARVLEILDTTTSFDREERHAFFAGLDIAPLGNMGLSNDDRDYLGDLVAEYAASEGV LRRLYNPESLFASHGTCCAGLIVGEPAVVAEEGTPSLPPEGAFYGNGDELRTSGNRNVIPYFGVDPFSRLISIRTSFEDD VRQFIAAFLYAYLQKADVIVLPRGLPDPKHSIVDPKNELKADLELWKNQDAANLFTRIALADQGGPELEPKAAQKGSNPD RPWHVLKQLILAISRHIPIVCAAGNSGESQLIYPANLAADNNGVIAVGAVTVEGFRSGYSNYGEGLTVVSPSDDGEVFNR HQLRLDRLSPFAAQHDYSAFRTREYCYSHFSLLTTDLSGIFGYDHGSDPWSAVVPFGTNPGIGGGYYTTFGGTSGAAAQV GGLCALIQRAYKSRHNLGDRLSGPQVKSILKTASRLDAIVAPGTRKLTADCMNAESEDAVEMAYFFGSGLPNARAAVQAA LAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60598; Mature: 60466
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00137 SUBTILASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQTKMPEPAPINYYYLWHLTALGVVDAEYGSAPPMPPAPDASAARALPDPLITGTVWD CCCCCCCCCCCCCCEEEEEEEHHHHEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH AIVSAGPLRPARVALIDVGVSPDHPNLATRLDREASIDLTTHRYGARVLEILDTTTSFDR HHHHCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCH EERHAFFAGLDIAPLGNMGLSNDDRDYLGDLVAEYAASEGVLRRLYNPESLFASHGTCCA HHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEE GLIVGEPAVVAEEGTPSLPPEGAFYGNGDELRTSGNRNVIPYFGVDPFSRLISIRTSFED EEEECCCEEEECCCCCCCCCCCCCCCCCCHHEECCCCCEEEEECCCHHHHHHHHHCCHHH DVRQFIAAFLYAYLQKADVIVLPRGLPDPKHSIVDPKNELKADLELWKNQDAANLFTRIA HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH LADQGGPELEPKAAQKGSNPDRPWHVLKQLILAISRHIPIVCAAGNSGESQLIYPANLAA CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCC DNNGVIAVGAVTVEGFRSGYSNYGEGLTVVSPSDDGEVFNRHQLRLDRLSPFAAQHDYSA CCCCEEEEEEEEHHHHHHCHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCHHH FRTREYCYSHFSLLTTDLSGIFGYDHGSDPWSAVVPFGTNPGIGGGYYTTFGGTSGAAAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHH VGGLCALIQRAYKSRHNLGDRLSGPQVKSILKTASRLDAIVAPGTRKLTADCMNAESEDA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCHH VEMAYFFGSGLPNARAAVQAALAI HHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure TDQTKMPEPAPINYYYLWHLTALGVVDAEYGSAPPMPPAPDASAARALPDPLITGTVWD CCCCCCCCCCCCCEEEEEEEHHHHEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH AIVSAGPLRPARVALIDVGVSPDHPNLATRLDREASIDLTTHRYGARVLEILDTTTSFDR HHHHCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCH EERHAFFAGLDIAPLGNMGLSNDDRDYLGDLVAEYAASEGVLRRLYNPESLFASHGTCCA HHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEE GLIVGEPAVVAEEGTPSLPPEGAFYGNGDELRTSGNRNVIPYFGVDPFSRLISIRTSFED EEEECCCEEEECCCCCCCCCCCCCCCCCCHHEECCCCCEEEEECCCHHHHHHHHHCCHHH DVRQFIAAFLYAYLQKADVIVLPRGLPDPKHSIVDPKNELKADLELWKNQDAANLFTRIA HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH LADQGGPELEPKAAQKGSNPDRPWHVLKQLILAISRHIPIVCAAGNSGESQLIYPANLAA CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCC DNNGVIAVGAVTVEGFRSGYSNYGEGLTVVSPSDDGEVFNRHQLRLDRLSPFAAQHDYSA CCCCEEEEEEEEHHHHHHCHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCHHH FRTREYCYSHFSLLTTDLSGIFGYDHGSDPWSAVVPFGTNPGIGGGYYTTFGGTSGAAAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHH VGGLCALIQRAYKSRHNLGDRLSGPQVKSILKTASRLDAIVAPGTRKLTADCMNAESEDA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCHH VEMAYFFGSGLPNARAAVQAALAI HHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA