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The map label for this gene is ycjR [C]

Identifier: 116249249

GI number: 116249249

Start: 634867

End: 635706

Strand: Reverse

Name: ycjR [C]

Synonym: pRL120584

Alternate gene names: 116249249

Gene position: 635706-634867 (Counterclockwise)

Preceding gene: 116249254

Following gene: 116249247

Centisome position: 73.07

GC content: 61.79

Gene sequence:

>840_bases
ATGTGCATGTTCCTCTGGACGACAAGTGTCGGCCGGAAACACGAGGCACTGTTACGCGACATCAAGGATACGGGGTTTGA
CGGTGTCGAGATCCCGATCTTTTCAGGCACACCCGACGACTACCATCGGCTGGCAGACATGCTGGACCGGATCGGCCTGG
AACGGACCGCCGTTTCCGCCATGGGCGATCCGCAAATGAACCTGATCGCCGCCGACGCTGCGACCCGCAGACGCGGCATC
GACTACATGAAATGGGCCATCGACTGCAGCGATGCGCTGGGCGCAACGATGCTGAGCGGGCCGCTGCATTCGACGCTCGG
CAAATTTTCAGGAAGCGGGCCGAGCGCGGCGGAACTCAAGCGCTCGATTTCCTCACAACGCGCGATCGGCGATCATGCAG
CAAAGCACGGCGTAACGATCGGGCTTGAGGCGCTGAACCGCTTCGAATGCTACCTGTTCAACACGATGGACGATCTTGCG
GTCCATATCGACGCGGTCGGACATCCGCATATCCGCGCCATGTACGACACGTTCCACAGCAATATCGAAGAGACCGACCC
CATCGGCGCGTTCACGCGAAACAGCAACCGCATCGTGCATGTTCACATTTCGGAGAACGACCGCGGCGTACCGGGGCGCG
GCAACATTCCCTGGGCGGAGACGTTTAGGGCGCTACGCGCGAGCGGCTACGACGGGTGGCTGACAATCGAGGCCTTCGGC
AGGGCGCTCAAGGAGCTCGCCGCCGCGACAAAGGTCTGGCGCGACTTTTCCGAGACACCGGAAGCGGTCTATCGCGAAGG
CTACCGCCATATCCGCGATGGATGGCACGCGGCGGCATGA

Upstream 100 bases:

>100_bases
AATTCGAAGATTTGGTATGACCAGATCTGGAAAAGTAATAGGGCGTTGAAATCGTCGCACAGTGGCAGCAGGGCCAAATG
GAGGGGAGATGAAGATCGGC

Downstream 100 bases:

>100_bases
ATACCAACCGATTCTCGACGCGGTCGATAAGGGAACCATCGGCCTGAACGCTGCACTGGTAGGCACGCCTTAGCCTGAGC
AATCACCTTCTGCCTGCTCT

Product: putative epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MCMFLWTTSVGRKHEALLRDIKDTGFDGVEIPIFSGTPDDYHRLADMLDRIGLERTAVSAMGDPQMNLIAADAATRRRGI
DYMKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSISSQRAIGDHAAKHGVTIGLEALNRFECYLFNTMDDLA
VHIDAVGHPHIRAMYDTFHSNIEETDPIGAFTRNSNRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTIEAFG
RALKELAAATKVWRDFSETPEAVYREGYRHIRDGWHAAA

Sequences:

>Translated_279_residues
MCMFLWTTSVGRKHEALLRDIKDTGFDGVEIPIFSGTPDDYHRLADMLDRIGLERTAVSAMGDPQMNLIAADAATRRRGI
DYMKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSISSQRAIGDHAAKHGVTIGLEALNRFECYLFNTMDDLA
VHIDAVGHPHIRAMYDTFHSNIEETDPIGAFTRNSNRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTIEAFG
RALKELAAATKVWRDFSETPEAVYREGYRHIRDGWHAAA
>Mature_279_residues
MCMFLWTTSVGRKHEALLRDIKDTGFDGVEIPIFSGTPDDYHRLADMLDRIGLERTAVSAMGDPQMNLIAADAATRRRGI
DYMKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSISSQRAIGDHAAKHGVTIGLEALNRFECYLFNTMDDLA
VHIDAVGHPHIRAMYDTFHSNIEETDPIGAFTRNSNRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTIEAFG
RALKELAAATKVWRDFSETPEAVYREGYRHIRDGWHAAA

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=240, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994933, Length=252, Percent_Identity=23.4126984126984, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 30871; Mature: 30871

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCMFLWTTSVGRKHEALLRDIKDTGFDGVEIPIFSGTPDDYHRLADMLDRIGLERTAVSA
CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHH
MGDPQMNLIAADAATRRRGIDYMKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELK
CCCCCCEEEECCHHHHHCCCHHHHHEECCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHH
RSISSQRAIGDHAAKHGVTIGLEALNRFECYLFNTMDDLAVHIDAVGHPHIRAMYDTFHS
HHHHHHHHHHHHHHHCCCEEEHHHHHHHHEEEECCHHHHEEEEECCCCCHHHHHHHHHHC
NIEETDPIGAFTRNSNRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTIEAFG
CCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHH
RALKELAAATKVWRDFSETPEAVYREGYRHIRDGWHAAA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCMFLWTTSVGRKHEALLRDIKDTGFDGVEIPIFSGTPDDYHRLADMLDRIGLERTAVSA
CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHH
MGDPQMNLIAADAATRRRGIDYMKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELK
CCCCCCEEEECCHHHHHCCCHHHHHEECCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHH
RSISSQRAIGDHAAKHGVTIGLEALNRFECYLFNTMDDLAVHIDAVGHPHIRAMYDTFHS
HHHHHHHHHHHHHHHCCCEEEHHHHHHHHEEEECCHHHHEEEEECCCCCHHHHHHHHHHC
NIEETDPIGAFTRNSNRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTIEAFG
CCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHH
RALKELAAATKVWRDFSETPEAVYREGYRHIRDGWHAAA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]