| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249184
Identifier: 116249184
GI number: 116249184
Start: 565934
End: 566539
Strand: Direct
Name: 116249184
Synonym: pRL120520
Alternate gene names: NA
Gene position: 565934-566539 (Clockwise)
Preceding gene: 116249183
Following gene: 116249185
Centisome position: 65.05
GC content: 60.23
Gene sequence:
>606_bases ATGAGTTTACGCAATGAAAGCCTGCAGATTTTCCTGGATGCGGCTTTCGTGGCTTTCGACCAGTTCGCCAAAGCCCCGGA AGCCCGCCGCTCGGTCCGTCAGATGTTTGCGGCGCTGGAGCGCCCGGGGGCTGCGCGGGCGGGAGAGGGAAGCCGATTGC CCGTGTGCGCTCAGCTTGATGTAGCGCTCTCGATCGATACGTCCTATCCTTCGCTGACGCAATTGATCGAGGGGTTCAAA GGCATCGAGCCAATGCTTGAATGGCGCCGGCGCACCAAGTATGACCACACGGCCAGCGACAATTTTGTCGATGGGCATGC TAATGCGATGATCATCGGCCCGGGAGGATTGGAGGAACGGAGCGACCTGTGGATCGGCGTGACGTTGATGGCGCCTCAGG TGCGCTATCCCGACCACGTTCATGCGCCAGAGGAGGTCTACCTCGTACTGTCCGAGGGAGAGTTCCAGCAGGGGGAAGGG GACTGGTTTTCGCCCGGCATCGGCGGATCCTTCTACAATGTCCCCGACATCAAGCATGCCATGAGGTCGCTCGACACGCC GCTCTTCGCCTTCTGGGCATTACTTGCCGAACGGCCAGCAGTTTAG
Upstream 100 bases:
>100_bases CAACACGCATGCCGCCGTCTATGACGGACTGCGCATCGCGAAAGATATCTGATCGCAGGAGCGGACCGCTTGCCGGCCGA TCGACTCGGGAGGTGATGAC
Downstream 100 bases:
>100_bases AAATAAAGGGGGTTGCCCATGAAGATACTCGTCCCAGTCAAACGGGTTGTCGACTACAACGTGAAGATCCGGGTGAAGCC GGACGGCACGGGTGTCGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSLRNESLQIFLDAAFVAFDQFAKAPEARRSVRQMFAALERPGAARAGEGSRLPVCAQLDVALSIDTSYPSLTQLIEGFK GIEPMLEWRRRTKYDHTASDNFVDGHANAMIIGPGGLEERSDLWIGVTLMAPQVRYPDHVHAPEEVYLVLSEGEFQQGEG DWFSPGIGGSFYNVPDIKHAMRSLDTPLFAFWALLAERPAV
Sequences:
>Translated_201_residues MSLRNESLQIFLDAAFVAFDQFAKAPEARRSVRQMFAALERPGAARAGEGSRLPVCAQLDVALSIDTSYPSLTQLIEGFK GIEPMLEWRRRTKYDHTASDNFVDGHANAMIIGPGGLEERSDLWIGVTLMAPQVRYPDHVHAPEEVYLVLSEGEFQQGEG DWFSPGIGGSFYNVPDIKHAMRSLDTPLFAFWALLAERPAV >Mature_200_residues SLRNESLQIFLDAAFVAFDQFAKAPEARRSVRQMFAALERPGAARAGEGSRLPVCAQLDVALSIDTSYPSLTQLIEGFKG IEPMLEWRRRTKYDHTASDNFVDGHANAMIIGPGGLEERSDLWIGVTLMAPQVRYPDHVHAPEEVYLVLSEGEFQQGEGD WFSPGIGGSFYNVPDIKHAMRSLDTPLFAFWALLAERPAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22327; Mature: 22195
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRNESLQIFLDAAFVAFDQFAKAPEARRSVRQMFAALERPGAARAGEGSRLPVCAQLD CCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE VALSIDTSYPSLTQLIEGFKGIEPMLEWRRRTKYDHTASDNFVDGHANAMIIGPGGLEER EEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC SDLWIGVTLMAPQVRYPDHVHAPEEVYLVLSEGEFQQGEGDWFSPGIGGSFYNVPDIKHA CCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHH MRSLDTPLFAFWALLAERPAV HHHHCCHHHHHHHHHHCCCCC >Mature Secondary Structure SLRNESLQIFLDAAFVAFDQFAKAPEARRSVRQMFAALERPGAARAGEGSRLPVCAQLD CCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE VALSIDTSYPSLTQLIEGFKGIEPMLEWRRRTKYDHTASDNFVDGHANAMIIGPGGLEER EEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC SDLWIGVTLMAPQVRYPDHVHAPEEVYLVLSEGEFQQGEGDWFSPGIGGSFYNVPDIKHA CCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHH MRSLDTPLFAFWALLAERPAV HHHHCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA