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The map label for this gene is ybdA [C]

Identifier: 116249116

GI number: 116249116

Start: 486020

End: 487615

Strand: Reverse

Name: ybdA [C]

Synonym: pRL120451

Alternate gene names: 116249116

Gene position: 487615-486020 (Counterclockwise)

Preceding gene: 116249117

Following gene: 116249115

Centisome position: 56.05

GC content: 62.72

Gene sequence:

>1596_bases
ATGAGCACCAAATCCTCCGGGGGCAGCTTTGCTCCGCTTGCCCAGCCCGTCTTTGCAGTTCTTTGGGCTGCAACCGTCCT
TGGAAATACCGGCAGCTTTATGCGCGATGTCGCCAGTTCCTGGCTCATGACTGATCTATCGGCTTCGCCGGCCGCCGTCG
CCCTGGTGCAGGCGGCCGGAACCCTGCCGATCTTCCTCCTGGCAATACCTGCGGGCGTGCTCACCGATATTCTCGATCGT
CGCAAGTTCCTGATCGCCGTGCAGATCTTGCTCGCCTCAGTCAGCGTAAGCCTGATGGTCCTGGCAAATACCGGCATGCT
TTCGATCAGTGCGCTGATCGGCCTGACCTTCCTTGGCGGCATCGGCGCCGCGTTGATGGGGCCGACCTGGCAGGCGATCG
TGCCGGAACTGGTGAAAAGAGAAGACGTCAAGAGCGCCGTCGCGCTCAACTCGCTCGGCATCAATATCGCCCGGTCGATC
GGGCCGGCCGCCGGCGGTCTGCTCCTTGCTGCCTTCGGCGCGGGCGTCACCTATGGCGCGGATGTTGCCAGCTATCTCGT
CGTCATCGCGGCGCTCGTCTGGTGGCCGCGGGCAAAGAACACAAATGATGCGCTGGCTGAAGGTTTCTTCGGCGCGTTCC
GTGCAGGCCTGCGCTACACCCGCGCCAGCAAGCCCTTGCATGTCGTACTTTTGCGCGCGGCGATATTCTTTGCCTTCGCC
AGTGCCATCTGGGCACTCCTGCCGCTCGTCGCCCGAGAATTGCTCGGCGGTGACGCAGGCTTCTACGGTATCCTGCTTGG
CGCCATTGGCGCCGGCGCGATCGGCGGCGCATTGCTCATGCCTAAACTGCGCGAACGCCTGAATGCCGATGGCCTGCTTC
TAGGGGCCGCTGTCATCACCGCACTCGTCATGGGCGCTTTGTCGTTCGCGCCGCCGAAATGGGTCGCCATCATCGTCCTG
CTCTTTCTCGGAGGCGCTTGGATCACCGCCCTGACCACGCTGAATGGCGCAGCGCAGGCGGTGCTTCCGAACTGGGTCCG
CGGTCGCGGCCTGGCGGTCTATCTCACCGTCTTCAATGGTGCGATGACGGCAGGTAGCCTTGGCTGGGGTGCCGTTGGTG
AAGCTGCCGGGGTGCCGGGTGCGCTGCTGATCGGCGCGGTTGGACTGCTCATTGCGGGCTTCATCATGCATCGCTTAAAG
CTGCCGGCCGGCGACGCGGATATGGTGCCGTCCAATCACTGGCCAGAACCATTGGTCGCCGAGCCTATCGCCCACGACCG
CGGTCCTGTTCTGATCCTCATCGAATACCATGTCGAAAAACATCATCGCACAGCCTTCCTGCATGCGCTGGATGAGATGT
CCCACGAGCGGCGGCGGGACGGCGCCTACGGATGGGGGGTGACGGAAGACTCCGCCGATCCGCAAAAGATTGTCGAATGG
TTCATGGTCGAATCCTGGGCCGAGCATCTTCGCCAGCACAAGCGGGTTTCAAATGCCGATGCTGATCTGCAAGGCCAGGT
CCTCGCCTATCACTCAGGAACGGATAAGCCCGTTGTCCGGCATTTCCTCACAATCAACCGGCCGGGGGCCGCCTAG

Upstream 100 bases:

>100_bases
TAGACCGCATGATGGCAACCAACGCCTTCTTCGAACATCTCGGGCTCGCCGGCGCTTTCATCATTGTCGCGGCAATTGAT
TTGACCAAGGGAGCAGGCAA

Downstream 100 bases:

>100_bases
CGACGCAGTTGGGCGGCATCCGCTGCTACCCTCGCAATCATACTCAATAAAGGATGACGGTAATCGACAATGACCGAGAA
CTTCCCTTCCATCACCCGCC

Product: MFS family transporter

Products: NA

Alternate protein names: MFS Permease; Facilitator Superfamily Protein; MFS Family Transporter; MFS Transporter; Transporter Facilitator Family; Facilitator Superfamily; Arabinose Efflux Permease Family Protein; Multidrug ABC Transporter; Transport Transmembrane Protein; Facilitator Superfamily Permease; Mfs Transporter; Facilitator Superfamily Transmembrane Transporter; Facilitator Superfamily Transporter; Permease Of Facilitator Superfamily Protein; Integral Membrane Efflux Protein; ABC Transporter Permease Protein; Facilitator Transpoter; Dioxygenase; MFS Family Diterpenoid Transporter

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MSTKSSGGSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAAGTLPIFLLAIPAGVLTDILDR
RKFLIAVQILLASVSVSLMVLANTGMLSISALIGLTFLGGIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSI
GPAAGGLLLAAFGAGVTYGADVASYLVVIAALVWWPRAKNTNDALAEGFFGAFRAGLRYTRASKPLHVVLLRAAIFFAFA
SAIWALLPLVARELLGGDAGFYGILLGAIGAGAIGGALLMPKLRERLNADGLLLGAAVITALVMGALSFAPPKWVAIIVL
LFLGGAWITALTTLNGAAQAVLPNWVRGRGLAVYLTVFNGAMTAGSLGWGAVGEAAGVPGALLIGAVGLLIAGFIMHRLK
LPAGDADMVPSNHWPEPLVAEPIAHDRGPVLILIEYHVEKHHRTAFLHALDEMSHERRRDGAYGWGVTEDSADPQKIVEW
FMVESWAEHLRQHKRVSNADADLQGQVLAYHSGTDKPVVRHFLTINRPGAA

Sequences:

>Translated_531_residues
MSTKSSGGSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAAGTLPIFLLAIPAGVLTDILDR
RKFLIAVQILLASVSVSLMVLANTGMLSISALIGLTFLGGIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSI
GPAAGGLLLAAFGAGVTYGADVASYLVVIAALVWWPRAKNTNDALAEGFFGAFRAGLRYTRASKPLHVVLLRAAIFFAFA
SAIWALLPLVARELLGGDAGFYGILLGAIGAGAIGGALLMPKLRERLNADGLLLGAAVITALVMGALSFAPPKWVAIIVL
LFLGGAWITALTTLNGAAQAVLPNWVRGRGLAVYLTVFNGAMTAGSLGWGAVGEAAGVPGALLIGAVGLLIAGFIMHRLK
LPAGDADMVPSNHWPEPLVAEPIAHDRGPVLILIEYHVEKHHRTAFLHALDEMSHERRRDGAYGWGVTEDSADPQKIVEW
FMVESWAEHLRQHKRVSNADADLQGQVLAYHSGTDKPVVRHFLTINRPGAA
>Mature_530_residues
STKSSGGSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAAGTLPIFLLAIPAGVLTDILDRR
KFLIAVQILLASVSVSLMVLANTGMLSISALIGLTFLGGIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSIG
PAAGGLLLAAFGAGVTYGADVASYLVVIAALVWWPRAKNTNDALAEGFFGAFRAGLRYTRASKPLHVVLLRAAIFFAFAS
AIWALLPLVARELLGGDAGFYGILLGAIGAGAIGGALLMPKLRERLNADGLLLGAAVITALVMGALSFAPPKWVAIIVLL
FLGGAWITALTTLNGAAQAVLPNWVRGRGLAVYLTVFNGAMTAGSLGWGAVGEAAGVPGALLIGAVGLLIAGFIMHRLKL
PAGDADMVPSNHWPEPLVAEPIAHDRGPVLILIEYHVEKHHRTAFLHALDEMSHERRRDGAYGWGVTEDSADPQKIVEWF
MVESWAEHLRQHKRVSNADADLQGQVLAYHSGTDKPVVRHFLTINRPGAA

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55655; Mature: 55524

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKSSGGSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TLPIFLLAIPAGVLTDILDRRKFLIAVQILLASVSVSLMVLANTGMLSISALIGLTFLGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
IGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSIGPAAGGLLLAAFGAGVTYGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCCCHHH
DVASYLVVIAALVWWPRAKNTNDALAEGFFGAFRAGLRYTRASKPLHVVLLRAAIFFAFA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SAIWALLPLVARELLGGDAGFYGILLGAIGAGAIGGALLMPKLRERLNADGLLLGAAVIT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ALVMGALSFAPPKWVAIIVLLFLGGAWITALTTLNGAAQAVLPNWVRGRGLAVYLTVFNG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCEEEEEEECCC
AMTAGSLGWGAVGEAAGVPGALLIGAVGLLIAGFIMHRLKLPAGDADMVPSNHWPEPLVA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
EPIAHDRGPVLILIEYHVEKHHRTAFLHALDEMSHERRRDGAYGWGVTEDSADPQKIVEW
CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
FMVESWAEHLRQHKRVSNADADLQGQVLAYHSGTDKPVVRHFLTINRPGAA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STKSSGGSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAAG
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TLPIFLLAIPAGVLTDILDRRKFLIAVQILLASVSVSLMVLANTGMLSISALIGLTFLGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
IGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSIGPAAGGLLLAAFGAGVTYGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCCCHHH
DVASYLVVIAALVWWPRAKNTNDALAEGFFGAFRAGLRYTRASKPLHVVLLRAAIFFAFA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SAIWALLPLVARELLGGDAGFYGILLGAIGAGAIGGALLMPKLRERLNADGLLLGAAVIT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ALVMGALSFAPPKWVAIIVLLFLGGAWITALTTLNGAAQAVLPNWVRGRGLAVYLTVFNG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCEEEEEEECCC
AMTAGSLGWGAVGEAAGVPGALLIGAVGLLIAGFIMHRLKLPAGDADMVPSNHWPEPLVA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
EPIAHDRGPVLILIEYHVEKHHRTAFLHALDEMSHERRRDGAYGWGVTEDSADPQKIVEW
CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
FMVESWAEHLRQHKRVSNADADLQGQVLAYHSGTDKPVVRHFLTINRPGAA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA